Experiment: Thallium(I) acetate 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3438 and Shewana3_3439 are separated by 122 nucleotides Shewana3_3439 and Shewana3_3440 are separated by 300 nucleotides
Shewana3_3438: Shewana3_3438 - carbamoyl-phosphate synthase L chain, ATP-binding (RefSeq), at 4,116,555 to 4,121,108
_3438
Shewana3_3439: Shewana3_3439 - LysR family transcriptional regulator (RefSeq), at 4,121,231 to 4,122,142
_3439
Shewana3_3440: Shewana3_3440 - penicillin-binding protein, transpeptidase (RefSeq), at 4,122,443 to 4,123,240
_3440
Position (kb) 4121
4122
4123 Strain fitness (log2 ratio) -2
-1
0
1 at 4121.187 kb on - strand at 4121.245 kb on - strand at 4121.643 kb on - strand, within Shewana3_3439 at 4121.679 kb on + strand, within Shewana3_3439 at 4121.687 kb on - strand, within Shewana3_3439 at 4121.839 kb on + strand, within Shewana3_3439 at 4122.138 kb on + strand at 4122.212 kb on + strand at 4122.286 kb on - strand at 4122.319 kb on + strand at 4122.493 kb on - strand at 4122.496 kb on + strand at 4122.497 kb on + strand at 4122.704 kb on + strand, within Shewana3_3440 at 4122.717 kb on - strand, within Shewana3_3440 at 4122.893 kb on - strand, within Shewana3_3440 at 4122.986 kb on - strand, within Shewana3_3440 at 4122.986 kb on - strand, within Shewana3_3440 at 4122.998 kb on - strand, within Shewana3_3440 at 4123.095 kb on - strand, within Shewana3_3440
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.064 mg/ml remove 4,121,187 - +1.7 4,121,245 - -0.6 4,121,643 - Shewana3_3439 0.45 -1.1 4,121,679 + Shewana3_3439 0.49 +0.7 4,121,687 - Shewana3_3439 0.50 +0.1 4,121,839 + Shewana3_3439 0.67 -0.3 4,122,138 + -0.1 4,122,212 + +0.1 4,122,286 - +0.9 4,122,319 + -0.4 4,122,493 - +0.5 4,122,496 + +0.5 4,122,497 + +0.1 4,122,704 + Shewana3_3440 0.33 -2.1 4,122,717 - Shewana3_3440 0.34 -1.1 4,122,893 - Shewana3_3440 0.56 -1.0 4,122,986 - Shewana3_3440 0.68 +0.5 4,122,986 - Shewana3_3440 0.68 +0.8 4,122,998 - Shewana3_3440 0.70 -0.5 4,123,095 - Shewana3_3440 0.82 +0.6
Or see this region's nucleotide sequence