Experiment: Thallium(I) acetate 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3398 and Shewana3_3399 are separated by 9 nucleotides Shewana3_3399 and Shewana3_3400 are separated by 88 nucleotides
Shewana3_3398: Shewana3_3398 - alpha/beta hydrolase fold (RefSeq), at 4,067,477 to 4,068,460
_3398
Shewana3_3399: Shewana3_3399 - hypothetical protein (RefSeq), at 4,068,470 to 4,068,715
_3399
Shewana3_3400: Shewana3_3400 - phosphoribulokinase/uridine kinase (RefSeq), at 4,068,804 to 4,069,691
_3400
Position (kb)
4068
4069 Strain fitness (log2 ratio)
-1
0
1 at 4067.530 kb on - strand at 4067.562 kb on - strand at 4067.623 kb on + strand, within Shewana3_3398 at 4067.666 kb on + strand, within Shewana3_3398 at 4067.676 kb on + strand, within Shewana3_3398 at 4067.689 kb on - strand, within Shewana3_3398 at 4067.731 kb on - strand, within Shewana3_3398 at 4067.771 kb on - strand, within Shewana3_3398 at 4067.825 kb on - strand, within Shewana3_3398 at 4067.872 kb on - strand, within Shewana3_3398 at 4067.900 kb on + strand, within Shewana3_3398 at 4067.900 kb on + strand, within Shewana3_3398 at 4067.939 kb on - strand, within Shewana3_3398 at 4067.959 kb on + strand, within Shewana3_3398 at 4068.223 kb on - strand, within Shewana3_3398 at 4068.223 kb on - strand, within Shewana3_3398 at 4068.237 kb on + strand, within Shewana3_3398 at 4068.363 kb on + strand at 4068.410 kb on - strand at 4068.463 kb on - strand at 4068.573 kb on + strand, within Shewana3_3399 at 4069.079 kb on - strand, within Shewana3_3400 at 4069.079 kb on - strand, within Shewana3_3400 at 4069.194 kb on + strand, within Shewana3_3400 at 4069.202 kb on - strand, within Shewana3_3400 at 4069.218 kb on + strand, within Shewana3_3400 at 4069.320 kb on + strand, within Shewana3_3400 at 4069.328 kb on - strand, within Shewana3_3400 at 4069.328 kb on - strand, within Shewana3_3400 at 4069.387 kb on - strand, within Shewana3_3400 at 4069.450 kb on + strand, within Shewana3_3400 at 4069.558 kb on + strand, within Shewana3_3400 at 4069.558 kb on + strand, within Shewana3_3400 at 4069.579 kb on + strand, within Shewana3_3400 at 4069.612 kb on + strand at 4069.675 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.064 mg/ml remove 4,067,530 - +0.1 4,067,562 - +0.3 4,067,623 + Shewana3_3398 0.15 +0.2 4,067,666 + Shewana3_3398 0.19 +0.3 4,067,676 + Shewana3_3398 0.20 +0.7 4,067,689 - Shewana3_3398 0.22 -0.8 4,067,731 - Shewana3_3398 0.26 +0.1 4,067,771 - Shewana3_3398 0.30 +0.3 4,067,825 - Shewana3_3398 0.35 -0.5 4,067,872 - Shewana3_3398 0.40 +0.2 4,067,900 + Shewana3_3398 0.43 +0.2 4,067,900 + Shewana3_3398 0.43 +0.3 4,067,939 - Shewana3_3398 0.47 +0.2 4,067,959 + Shewana3_3398 0.49 -0.3 4,068,223 - Shewana3_3398 0.76 +0.5 4,068,223 - Shewana3_3398 0.76 -0.2 4,068,237 + Shewana3_3398 0.77 -0.1 4,068,363 + -0.3 4,068,410 - +0.0 4,068,463 - -0.6 4,068,573 + Shewana3_3399 0.42 +0.3 4,069,079 - Shewana3_3400 0.31 +0.9 4,069,079 - Shewana3_3400 0.31 +0.0 4,069,194 + Shewana3_3400 0.44 +0.5 4,069,202 - Shewana3_3400 0.45 +0.5 4,069,218 + Shewana3_3400 0.47 -0.1 4,069,320 + Shewana3_3400 0.58 -0.3 4,069,328 - Shewana3_3400 0.59 +0.3 4,069,328 - Shewana3_3400 0.59 -0.5 4,069,387 - Shewana3_3400 0.66 -0.7 4,069,450 + Shewana3_3400 0.73 +0.3 4,069,558 + Shewana3_3400 0.85 +0.7 4,069,558 + Shewana3_3400 0.85 -0.1 4,069,579 + Shewana3_3400 0.87 +0.5 4,069,612 + -0.5 4,069,675 - -0.7
Or see this region's nucleotide sequence