Experiment: Thallium(I) acetate 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3358 and Shewana3_3359 are separated by 173 nucleotides Shewana3_3359 and Shewana3_3360 are separated by 13 nucleotides Shewana3_3360 and Shewana3_3361 are separated by 70 nucleotides Shewana3_3361 and Shewana3_3362 are separated by 55 nucleotides
Shewana3_3358: Shewana3_3358 - acetyltransferase (RefSeq), at 4,029,302 to 4,029,850
_3358
Shewana3_3359: Shewana3_3359 - GGDEF domain-containing protein (RefSeq), at 4,030,024 to 4,031,037
_3359
Shewana3_3360: Shewana3_3360 - hypothetical protein (RefSeq), at 4,031,051 to 4,031,284
_3360
Shewana3_3361: Shewana3_3361 - protein of unknown function DUF306, Meta and HslJ (RefSeq), at 4,031,355 to 4,031,771
_3361
Shewana3_3362: Shewana3_3362 - sodium:dicarboxylate symporter (RefSeq), at 4,031,827 to 4,033,149
_3362
Position (kb)
4030
4031
4032 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 4029.043 kb on - strand at 4029.187 kb on - strand at 4029.220 kb on + strand at 4029.230 kb on + strand at 4029.289 kb on + strand at 4029.297 kb on - strand at 4029.300 kb on + strand at 4029.314 kb on - strand at 4029.314 kb on - strand at 4029.436 kb on - strand, within Shewana3_3358 at 4029.509 kb on + strand, within Shewana3_3358 at 4029.527 kb on - strand, within Shewana3_3358 at 4029.551 kb on - strand, within Shewana3_3358 at 4029.698 kb on - strand, within Shewana3_3358 at 4029.872 kb on + strand at 4029.894 kb on + strand at 4030.052 kb on - strand at 4030.123 kb on + strand at 4030.157 kb on + strand, within Shewana3_3359 at 4030.289 kb on + strand, within Shewana3_3359 at 4030.370 kb on - strand, within Shewana3_3359 at 4030.370 kb on - strand, within Shewana3_3359 at 4030.585 kb on - strand, within Shewana3_3359 at 4030.803 kb on - strand, within Shewana3_3359 at 4030.941 kb on + strand at 4031.024 kb on + strand at 4031.056 kb on - strand at 4031.128 kb on + strand, within Shewana3_3360 at 4031.143 kb on + strand, within Shewana3_3360 at 4031.143 kb on + strand, within Shewana3_3360 at 4031.151 kb on - strand, within Shewana3_3360 at 4031.198 kb on + strand, within Shewana3_3360 at 4031.349 kb on + strand at 4031.495 kb on + strand, within Shewana3_3361 at 4031.503 kb on - strand, within Shewana3_3361 at 4031.632 kb on + strand, within Shewana3_3361 at 4031.632 kb on + strand, within Shewana3_3361 at 4031.665 kb on - strand, within Shewana3_3361 at 4031.665 kb on - strand, within Shewana3_3361 at 4031.721 kb on + strand, within Shewana3_3361 at 4031.762 kb on + strand at 4031.884 kb on + strand at 4031.889 kb on - strand at 4031.907 kb on + strand at 4031.970 kb on + strand, within Shewana3_3362 at 4031.979 kb on - strand, within Shewana3_3362
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.064 mg/ml remove 4,029,043 - -0.9 4,029,187 - -0.6 4,029,220 + -0.3 4,029,230 + -1.1 4,029,289 + +0.3 4,029,297 - -1.1 4,029,300 + -1.6 4,029,314 - +1.0 4,029,314 - +0.7 4,029,436 - Shewana3_3358 0.24 +0.3 4,029,509 + Shewana3_3358 0.38 -0.6 4,029,527 - Shewana3_3358 0.41 -0.7 4,029,551 - Shewana3_3358 0.45 +0.0 4,029,698 - Shewana3_3358 0.72 -0.3 4,029,872 + -2.9 4,029,894 + -1.5 4,030,052 - -1.1 4,030,123 + +0.1 4,030,157 + Shewana3_3359 0.13 +0.0 4,030,289 + Shewana3_3359 0.26 +1.1 4,030,370 - Shewana3_3359 0.34 +0.3 4,030,370 - Shewana3_3359 0.34 -0.1 4,030,585 - Shewana3_3359 0.55 +1.1 4,030,803 - Shewana3_3359 0.77 +0.4 4,030,941 + -0.1 4,031,024 + -0.5 4,031,056 - +0.3 4,031,128 + Shewana3_3360 0.33 +0.7 4,031,143 + Shewana3_3360 0.39 +0.8 4,031,143 + Shewana3_3360 0.39 +0.4 4,031,151 - Shewana3_3360 0.43 +0.6 4,031,198 + Shewana3_3360 0.63 -0.6 4,031,349 + +1.0 4,031,495 + Shewana3_3361 0.34 -0.1 4,031,503 - Shewana3_3361 0.35 +0.5 4,031,632 + Shewana3_3361 0.66 +1.7 4,031,632 + Shewana3_3361 0.66 +0.3 4,031,665 - Shewana3_3361 0.74 -1.6 4,031,665 - Shewana3_3361 0.74 -0.7 4,031,721 + Shewana3_3361 0.88 +0.5 4,031,762 + +0.4 4,031,884 + -0.5 4,031,889 - +0.6 4,031,907 + -1.1 4,031,970 + Shewana3_3362 0.11 -1.0 4,031,979 - Shewana3_3362 0.11 +0.9
Or see this region's nucleotide sequence