Experiment: Thallium(I) acetate 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3293 and Shewana3_3294 are separated by 168 nucleotides Shewana3_3294 and Shewana3_3295 are separated by 391 nucleotides Shewana3_3295 and lysS are separated by 102 nucleotides
Shewana3_3293: Shewana3_3293 - LysR family transcriptional regulator (RefSeq), at 3,942,279 to 3,943,205
_3293
Shewana3_3294: Shewana3_3294 - glyoxalase/bleomycin resistance protein/dioxygenase (RefSeq), at 3,943,374 to 3,943,877
_3294
Shewana3_3295: Shewana3_3295 - hypothetical protein (RefSeq), at 3,944,269 to 3,944,712
_3295
Shewana3_3296: lysS - lysyl-tRNA synthetase (RefSeq), at 3,944,815 to 3,946,317
lysS
Position (kb)
3943
3944 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3942.514 kb on - strand, within Shewana3_3293 at 3942.598 kb on + strand, within Shewana3_3293 at 3942.719 kb on - strand, within Shewana3_3293 at 3942.742 kb on - strand, within Shewana3_3293 at 3942.765 kb on + strand, within Shewana3_3293 at 3942.908 kb on + strand, within Shewana3_3293 at 3942.999 kb on + strand, within Shewana3_3293 at 3943.064 kb on + strand, within Shewana3_3293 at 3943.117 kb on - strand at 3943.187 kb on - strand at 3943.202 kb on + strand at 3943.296 kb on + strand at 3943.357 kb on - strand at 3943.453 kb on - strand, within Shewana3_3294 at 3943.463 kb on - strand, within Shewana3_3294 at 3943.523 kb on + strand, within Shewana3_3294 at 3943.523 kb on + strand, within Shewana3_3294 at 3943.523 kb on + strand, within Shewana3_3294 at 3943.526 kb on - strand, within Shewana3_3294 at 3943.526 kb on - strand, within Shewana3_3294 at 3943.526 kb on - strand, within Shewana3_3294 at 3943.531 kb on - strand, within Shewana3_3294 at 3943.531 kb on - strand, within Shewana3_3294 at 3943.555 kb on - strand, within Shewana3_3294 at 3943.632 kb on - strand, within Shewana3_3294 at 3943.633 kb on - strand, within Shewana3_3294 at 3943.642 kb on + strand, within Shewana3_3294 at 3943.670 kb on + strand, within Shewana3_3294 at 3943.676 kb on - strand, within Shewana3_3294 at 3943.687 kb on + strand, within Shewana3_3294 at 3943.840 kb on + strand at 3943.845 kb on + strand at 3943.848 kb on - strand at 3943.851 kb on + strand at 3943.853 kb on - strand at 3943.859 kb on - strand at 3943.976 kb on + strand at 3943.994 kb on - strand at 3944.044 kb on + strand at 3944.156 kb on + strand at 3944.156 kb on + strand at 3944.156 kb on + strand at 3944.158 kb on - strand at 3944.163 kb on - strand at 3944.164 kb on - strand at 3944.164 kb on - strand at 3944.191 kb on + strand at 3944.199 kb on - strand at 3944.221 kb on - strand at 3944.223 kb on + strand at 3944.223 kb on + strand at 3944.317 kb on - strand, within Shewana3_3295 at 3944.317 kb on - strand, within Shewana3_3295 at 3944.327 kb on + strand, within Shewana3_3295 at 3944.335 kb on + strand, within Shewana3_3295 at 3944.394 kb on + strand, within Shewana3_3295 at 3944.428 kb on - strand, within Shewana3_3295 at 3944.554 kb on - strand, within Shewana3_3295
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.064 mg/ml remove 3,942,514 - Shewana3_3293 0.25 -1.3 3,942,598 + Shewana3_3293 0.34 -0.4 3,942,719 - Shewana3_3293 0.47 -1.0 3,942,742 - Shewana3_3293 0.50 -1.2 3,942,765 + Shewana3_3293 0.52 +0.0 3,942,908 + Shewana3_3293 0.68 +0.8 3,942,999 + Shewana3_3293 0.78 +0.8 3,943,064 + Shewana3_3293 0.85 -0.4 3,943,117 - +0.3 3,943,187 - -0.4 3,943,202 + +0.5 3,943,296 + -0.2 3,943,357 - +1.1 3,943,453 - Shewana3_3294 0.16 -0.1 3,943,463 - Shewana3_3294 0.18 -0.5 3,943,523 + Shewana3_3294 0.30 -1.0 3,943,523 + Shewana3_3294 0.30 -3.3 3,943,523 + Shewana3_3294 0.30 -0.1 3,943,526 - Shewana3_3294 0.30 -0.1 3,943,526 - Shewana3_3294 0.30 -0.1 3,943,526 - Shewana3_3294 0.30 +0.2 3,943,531 - Shewana3_3294 0.31 -0.4 3,943,531 - Shewana3_3294 0.31 +0.3 3,943,555 - Shewana3_3294 0.36 -0.4 3,943,632 - Shewana3_3294 0.51 +0.4 3,943,633 - Shewana3_3294 0.51 -0.6 3,943,642 + Shewana3_3294 0.53 -0.2 3,943,670 + Shewana3_3294 0.59 -0.0 3,943,676 - Shewana3_3294 0.60 -0.8 3,943,687 + Shewana3_3294 0.62 +0.5 3,943,840 + +0.2 3,943,845 + -0.9 3,943,848 - -1.1 3,943,851 + -0.1 3,943,853 - -0.4 3,943,859 - +0.2 3,943,976 + +0.6 3,943,994 - +1.2 3,944,044 + +0.3 3,944,156 + -0.4 3,944,156 + +0.1 3,944,156 + -0.3 3,944,158 - -0.2 3,944,163 - +0.2 3,944,164 - -0.8 3,944,164 - -0.9 3,944,191 + -0.5 3,944,199 - -0.6 3,944,221 - -0.5 3,944,223 + -0.2 3,944,223 + +0.4 3,944,317 - Shewana3_3295 0.11 -0.6 3,944,317 - Shewana3_3295 0.11 -0.8 3,944,327 + Shewana3_3295 0.13 -0.6 3,944,335 + Shewana3_3295 0.15 +0.3 3,944,394 + Shewana3_3295 0.28 +0.1 3,944,428 - Shewana3_3295 0.36 +0.0 3,944,554 - Shewana3_3295 0.64 +1.0
Or see this region's nucleotide sequence