Experiment: Thallium(I) acetate 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3190 and Shewana3_3191 are separated by 9 nucleotides Shewana3_3191 and Shewana3_3192 overlap by 4 nucleotides Shewana3_3192 and Shewana3_3193 are separated by 122 nucleotides
Shewana3_3190: Shewana3_3190 - sulfate ABC transporter, inner membrane subunit CysT (RefSeq), at 3,828,266 to 3,829,111
_3190
Shewana3_3191: Shewana3_3191 - sulfate ABC transporter, inner membrane subunit CysW (RefSeq), at 3,829,121 to 3,829,990
_3191
Shewana3_3192: Shewana3_3192 - sulfate ABC transporter, ATPase subunit (RefSeq), at 3,829,987 to 3,831,117
_3192
Shewana3_3193: Shewana3_3193 - secretion protein HlyD family protein (RefSeq), at 3,831,240 to 3,832,385
_3193
Position (kb)
3829
3830
3831
3832 Strain fitness (log2 ratio)
-1
0
1 at 3829.077 kb on - strand at 3829.311 kb on + strand, within Shewana3_3191 at 3829.689 kb on + strand, within Shewana3_3191 at 3829.770 kb on - strand, within Shewana3_3191 at 3829.783 kb on - strand, within Shewana3_3191 at 3829.852 kb on + strand, within Shewana3_3191 at 3829.875 kb on + strand, within Shewana3_3191 at 3829.889 kb on - strand, within Shewana3_3191 at 3829.920 kb on + strand at 3829.921 kb on - strand at 3829.966 kb on - strand at 3829.983 kb on - strand at 3830.076 kb on - strand at 3830.374 kb on + strand, within Shewana3_3192 at 3830.377 kb on - strand, within Shewana3_3192 at 3830.379 kb on + strand, within Shewana3_3192 at 3830.379 kb on + strand, within Shewana3_3192 at 3830.379 kb on + strand, within Shewana3_3192 at 3830.379 kb on + strand, within Shewana3_3192 at 3830.384 kb on + strand, within Shewana3_3192 at 3830.384 kb on + strand, within Shewana3_3192 at 3830.387 kb on - strand, within Shewana3_3192 at 3830.402 kb on - strand, within Shewana3_3192 at 3830.413 kb on - strand, within Shewana3_3192 at 3830.428 kb on + strand, within Shewana3_3192 at 3830.567 kb on + strand, within Shewana3_3192 at 3830.584 kb on + strand, within Shewana3_3192 at 3830.584 kb on + strand, within Shewana3_3192 at 3830.592 kb on - strand, within Shewana3_3192 at 3830.637 kb on + strand, within Shewana3_3192 at 3830.645 kb on - strand, within Shewana3_3192 at 3830.670 kb on - strand, within Shewana3_3192 at 3830.894 kb on + strand, within Shewana3_3192 at 3830.912 kb on + strand, within Shewana3_3192 at 3831.014 kb on - strand at 3831.014 kb on - strand at 3831.036 kb on - strand at 3831.067 kb on + strand at 3831.135 kb on - strand at 3831.195 kb on - strand at 3831.195 kb on - strand at 3831.205 kb on - strand at 3831.459 kb on - strand, within Shewana3_3193 at 3831.550 kb on - strand, within Shewana3_3193 at 3831.654 kb on - strand, within Shewana3_3193 at 3831.738 kb on - strand, within Shewana3_3193 at 3831.764 kb on - strand, within Shewana3_3193 at 3831.834 kb on - strand, within Shewana3_3193 at 3831.849 kb on - strand, within Shewana3_3193 at 3831.990 kb on + strand, within Shewana3_3193 at 3832.092 kb on - strand, within Shewana3_3193 at 3832.094 kb on + strand, within Shewana3_3193
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.064 mg/ml remove 3,829,077 - -1.0 3,829,311 + Shewana3_3191 0.22 -0.2 3,829,689 + Shewana3_3191 0.65 -1.1 3,829,770 - Shewana3_3191 0.75 -1.4 3,829,783 - Shewana3_3191 0.76 +1.4 3,829,852 + Shewana3_3191 0.84 -0.2 3,829,875 + Shewana3_3191 0.87 -1.0 3,829,889 - Shewana3_3191 0.88 -0.3 3,829,920 + -1.7 3,829,921 - -0.2 3,829,966 - -1.0 3,829,983 - -1.1 3,830,076 - -1.1 3,830,374 + Shewana3_3192 0.34 +0.2 3,830,377 - Shewana3_3192 0.34 -0.8 3,830,379 + Shewana3_3192 0.35 +0.6 3,830,379 + Shewana3_3192 0.35 -0.8 3,830,379 + Shewana3_3192 0.35 +0.4 3,830,379 + Shewana3_3192 0.35 +0.9 3,830,384 + Shewana3_3192 0.35 -0.2 3,830,384 + Shewana3_3192 0.35 +0.4 3,830,387 - Shewana3_3192 0.35 +0.5 3,830,402 - Shewana3_3192 0.37 -0.5 3,830,413 - Shewana3_3192 0.38 -0.4 3,830,428 + Shewana3_3192 0.39 +0.1 3,830,567 + Shewana3_3192 0.51 -0.2 3,830,584 + Shewana3_3192 0.53 +0.2 3,830,584 + Shewana3_3192 0.53 -0.0 3,830,592 - Shewana3_3192 0.53 -0.0 3,830,637 + Shewana3_3192 0.57 +0.2 3,830,645 - Shewana3_3192 0.58 -1.4 3,830,670 - Shewana3_3192 0.60 -0.7 3,830,894 + Shewana3_3192 0.80 +0.7 3,830,912 + Shewana3_3192 0.82 -0.3 3,831,014 - +0.2 3,831,014 - -0.2 3,831,036 - +0.5 3,831,067 + +0.2 3,831,135 - -0.3 3,831,195 - +1.5 3,831,195 - +1.0 3,831,205 - +0.4 3,831,459 - Shewana3_3193 0.19 +0.4 3,831,550 - Shewana3_3193 0.27 -0.1 3,831,654 - Shewana3_3193 0.36 -0.7 3,831,738 - Shewana3_3193 0.43 -0.1 3,831,764 - Shewana3_3193 0.46 -0.6 3,831,834 - Shewana3_3193 0.52 -0.6 3,831,849 - Shewana3_3193 0.53 +0.3 3,831,990 + Shewana3_3193 0.65 -0.7 3,832,092 - Shewana3_3193 0.74 +0.0 3,832,094 + Shewana3_3193 0.75 -0.6
Or see this region's nucleotide sequence