Experiment: Thallium(I) acetate 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3181 and Shewana3_3182 are separated by 298 nucleotides Shewana3_3182 and Shewana3_3183 are separated by 26 nucleotides Shewana3_3183 and Shewana3_3184 overlap by 1 nucleotides
Shewana3_3181: Shewana3_3181 - hypothetical protein (RefSeq), at 3,820,931 to 3,821,167
_3181
Shewana3_3182: Shewana3_3182 - MltA-interacting MipA family protein (RefSeq), at 3,821,466 to 3,822,380
_3182
Shewana3_3183: Shewana3_3183 - hypothetical protein (RefSeq), at 3,822,407 to 3,822,799
_3183
Shewana3_3184: Shewana3_3184 - two component transcriptional regulator (RefSeq), at 3,822,799 to 3,823,512
_3184
Position (kb)
3821
3822
3823 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3820.488 kb on + strand at 3820.496 kb on - strand at 3820.496 kb on - strand at 3820.536 kb on + strand at 3820.536 kb on + strand at 3820.540 kb on - strand at 3820.544 kb on - strand at 3820.639 kb on - strand at 3820.685 kb on + strand at 3820.693 kb on - strand at 3820.722 kb on + strand at 3820.740 kb on - strand at 3820.854 kb on - strand at 3820.967 kb on + strand, within Shewana3_3181 at 3821.028 kb on + strand, within Shewana3_3181 at 3821.102 kb on + strand, within Shewana3_3181 at 3821.430 kb on + strand at 3821.503 kb on - strand at 3821.503 kb on - strand at 3821.558 kb on + strand, within Shewana3_3182 at 3821.652 kb on - strand, within Shewana3_3182 at 3821.782 kb on - strand, within Shewana3_3182 at 3821.904 kb on + strand, within Shewana3_3182 at 3821.904 kb on + strand, within Shewana3_3182 at 3821.904 kb on + strand, within Shewana3_3182 at 3821.912 kb on - strand, within Shewana3_3182 at 3821.912 kb on - strand, within Shewana3_3182 at 3821.938 kb on + strand, within Shewana3_3182 at 3821.938 kb on + strand, within Shewana3_3182 at 3822.042 kb on + strand, within Shewana3_3182 at 3822.139 kb on - strand, within Shewana3_3182 at 3822.160 kb on + strand, within Shewana3_3182 at 3822.265 kb on + strand, within Shewana3_3182 at 3822.366 kb on + strand at 3822.374 kb on - strand at 3822.374 kb on - strand at 3822.381 kb on - strand at 3822.382 kb on - strand at 3822.417 kb on + strand at 3822.431 kb on - strand at 3822.434 kb on + strand at 3822.439 kb on + strand at 3822.458 kb on - strand, within Shewana3_3183 at 3822.503 kb on - strand, within Shewana3_3183 at 3822.763 kb on + strand at 3822.774 kb on + strand at 3822.774 kb on + strand at 3822.925 kb on + strand, within Shewana3_3184 at 3822.925 kb on + strand, within Shewana3_3184 at 3822.925 kb on + strand, within Shewana3_3184 at 3822.933 kb on - strand, within Shewana3_3184 at 3822.945 kb on + strand, within Shewana3_3184 at 3822.995 kb on + strand, within Shewana3_3184 at 3822.995 kb on + strand, within Shewana3_3184 at 3822.995 kb on + strand, within Shewana3_3184 at 3822.995 kb on + strand, within Shewana3_3184 at 3822.995 kb on + strand, within Shewana3_3184 at 3822.995 kb on + strand, within Shewana3_3184 at 3822.995 kb on + strand, within Shewana3_3184 at 3823.003 kb on - strand, within Shewana3_3184 at 3823.003 kb on - strand, within Shewana3_3184 at 3823.015 kb on - strand, within Shewana3_3184 at 3823.055 kb on + strand, within Shewana3_3184 at 3823.085 kb on + strand, within Shewana3_3184 at 3823.085 kb on + strand, within Shewana3_3184 at 3823.321 kb on + strand, within Shewana3_3184 at 3823.327 kb on + strand, within Shewana3_3184 at 3823.364 kb on + strand, within Shewana3_3184
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.064 mg/ml remove 3,820,488 + +0.5 3,820,496 - -0.3 3,820,496 - +0.1 3,820,536 + -0.5 3,820,536 + -0.4 3,820,540 - -0.1 3,820,544 - -0.4 3,820,639 - +0.0 3,820,685 + +1.0 3,820,693 - +0.4 3,820,722 + -0.1 3,820,740 - -1.2 3,820,854 - -1.2 3,820,967 + Shewana3_3181 0.15 -0.1 3,821,028 + Shewana3_3181 0.41 +0.3 3,821,102 + Shewana3_3181 0.72 +0.3 3,821,430 + -1.0 3,821,503 - +0.7 3,821,503 - -0.2 3,821,558 + Shewana3_3182 0.10 -1.5 3,821,652 - Shewana3_3182 0.20 -2.0 3,821,782 - Shewana3_3182 0.35 +0.2 3,821,904 + Shewana3_3182 0.48 -1.2 3,821,904 + Shewana3_3182 0.48 -0.3 3,821,904 + Shewana3_3182 0.48 -1.4 3,821,912 - Shewana3_3182 0.49 +0.5 3,821,912 - Shewana3_3182 0.49 -0.9 3,821,938 + Shewana3_3182 0.52 -1.7 3,821,938 + Shewana3_3182 0.52 -1.8 3,822,042 + Shewana3_3182 0.63 -0.8 3,822,139 - Shewana3_3182 0.74 -0.2 3,822,160 + Shewana3_3182 0.76 -1.0 3,822,265 + Shewana3_3182 0.87 -0.4 3,822,366 + -0.7 3,822,374 - -1.0 3,822,374 - +0.3 3,822,381 - -1.5 3,822,382 - -1.5 3,822,417 + +0.6 3,822,431 - -1.1 3,822,434 + -0.3 3,822,439 + -0.5 3,822,458 - Shewana3_3183 0.13 -2.0 3,822,503 - Shewana3_3183 0.24 -0.2 3,822,763 + +1.4 3,822,774 + +0.3 3,822,774 + +0.4 3,822,925 + Shewana3_3184 0.18 -0.9 3,822,925 + Shewana3_3184 0.18 -0.2 3,822,925 + Shewana3_3184 0.18 -0.1 3,822,933 - Shewana3_3184 0.19 -1.0 3,822,945 + Shewana3_3184 0.20 -0.2 3,822,995 + Shewana3_3184 0.27 +0.4 3,822,995 + Shewana3_3184 0.27 -1.2 3,822,995 + Shewana3_3184 0.27 +1.9 3,822,995 + Shewana3_3184 0.27 +1.0 3,822,995 + Shewana3_3184 0.27 +0.6 3,822,995 + Shewana3_3184 0.27 +0.4 3,822,995 + Shewana3_3184 0.27 -0.7 3,823,003 - Shewana3_3184 0.29 -0.5 3,823,003 - Shewana3_3184 0.29 -1.1 3,823,015 - Shewana3_3184 0.30 -0.7 3,823,055 + Shewana3_3184 0.36 -2.4 3,823,085 + Shewana3_3184 0.40 +0.6 3,823,085 + Shewana3_3184 0.40 -1.1 3,823,321 + Shewana3_3184 0.73 -0.6 3,823,327 + Shewana3_3184 0.74 +1.3 3,823,364 + Shewana3_3184 0.79 +0.2
Or see this region's nucleotide sequence