Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3113

Experiment: Thallium(I) acetate 0.064 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3112 and Shewana3_3113 are separated by 43 nucleotidesShewana3_3113 and Shewana3_3114 are separated by 58 nucleotides Shewana3_3112: Shewana3_3112 - N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) (from data), at 3,732,552 to 3,733,688 _3112 Shewana3_3113: Shewana3_3113 - Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) (from data), at 3,733,732 to 3,734,730 _3113 Shewana3_3114: Shewana3_3114 - N-acetylglucosamine kinase (EC 2.7.1.59) (from data), at 3,734,789 to 3,735,697 _3114 Position (kb) 3733 3734 3735Strain fitness (log2 ratio) -2 -1 0 1at 3732.745 kb on - strand, within Shewana3_3112at 3732.745 kb on - strand, within Shewana3_3112at 3732.745 kb on - strand, within Shewana3_3112at 3732.747 kb on + strand, within Shewana3_3112at 3732.747 kb on + strand, within Shewana3_3112at 3732.747 kb on + strand, within Shewana3_3112at 3732.776 kb on - strand, within Shewana3_3112at 3732.843 kb on - strand, within Shewana3_3112at 3732.853 kb on - strand, within Shewana3_3112at 3732.864 kb on + strand, within Shewana3_3112at 3733.127 kb on + strand, within Shewana3_3112at 3733.127 kb on + strand, within Shewana3_3112at 3733.261 kb on - strand, within Shewana3_3112at 3733.351 kb on - strand, within Shewana3_3112at 3733.544 kb on + strand, within Shewana3_3112at 3733.552 kb on - strand, within Shewana3_3112at 3733.612 kb on + strandat 3733.706 kb on - strandat 3733.893 kb on - strand, within Shewana3_3113at 3733.937 kb on + strand, within Shewana3_3113at 3733.937 kb on + strand, within Shewana3_3113at 3734.010 kb on + strand, within Shewana3_3113at 3734.031 kb on - strand, within Shewana3_3113at 3734.031 kb on - strand, within Shewana3_3113at 3734.092 kb on + strand, within Shewana3_3113at 3734.283 kb on - strand, within Shewana3_3113at 3734.831 kb on + strandat 3735.107 kb on + strand, within Shewana3_3114at 3735.223 kb on - strand, within Shewana3_3114at 3735.244 kb on + strand, within Shewana3_3114at 3735.275 kb on + strand, within Shewana3_3114at 3735.455 kb on + strand, within Shewana3_3114at 3735.455 kb on + strand, within Shewana3_3114at 3735.457 kb on - strand, within Shewana3_3114at 3735.463 kb on - strand, within Shewana3_3114

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.064 mg/ml
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3,732,745 - Shewana3_3112 0.17 +0.3
3,732,745 - Shewana3_3112 0.17 +0.8
3,732,745 - Shewana3_3112 0.17 +0.2
3,732,747 + Shewana3_3112 0.17 +0.5
3,732,747 + Shewana3_3112 0.17 -0.8
3,732,747 + Shewana3_3112 0.17 +0.9
3,732,776 - Shewana3_3112 0.20 +0.3
3,732,843 - Shewana3_3112 0.26 +0.4
3,732,853 - Shewana3_3112 0.26 +0.8
3,732,864 + Shewana3_3112 0.27 +0.4
3,733,127 + Shewana3_3112 0.51 -0.2
3,733,127 + Shewana3_3112 0.51 -0.6
3,733,261 - Shewana3_3112 0.62 -0.2
3,733,351 - Shewana3_3112 0.70 +0.3
3,733,544 + Shewana3_3112 0.87 +0.3
3,733,552 - Shewana3_3112 0.88 +1.4
3,733,612 + -2.2
3,733,706 - +0.0
3,733,893 - Shewana3_3113 0.16 +1.0
3,733,937 + Shewana3_3113 0.21 +0.3
3,733,937 + Shewana3_3113 0.21 +0.4
3,734,010 + Shewana3_3113 0.28 +0.4
3,734,031 - Shewana3_3113 0.30 +0.2
3,734,031 - Shewana3_3113 0.30 +0.7
3,734,092 + Shewana3_3113 0.36 -0.1
3,734,283 - Shewana3_3113 0.55 -0.3
3,734,831 + -1.6
3,735,107 + Shewana3_3114 0.35 -1.0
3,735,223 - Shewana3_3114 0.48 +0.9
3,735,244 + Shewana3_3114 0.50 +0.2
3,735,275 + Shewana3_3114 0.53 -0.6
3,735,455 + Shewana3_3114 0.73 -0.0
3,735,455 + Shewana3_3114 0.73 +0.3
3,735,457 - Shewana3_3114 0.73 +0.2
3,735,463 - Shewana3_3114 0.74 +0.3

Or see this region's nucleotide sequence