Experiment: Thallium(I) acetate 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3058 and Shewana3_3059 are separated by 127 nucleotides Shewana3_3059 and anmK are separated by 20 nucleotides
Shewana3_3058: Shewana3_3058 - tyrosyl-tRNA synthetase (RefSeq), at 3,664,316 to 3,665,512
_3058
Shewana3_3059: Shewana3_3059 - peptidase M23B (RefSeq), at 3,665,640 to 3,667,040
_3059
Shewana3_3060: anmK - anhydro-N-acetylmuramic acid kinase (RefSeq), at 3,667,061 to 3,668,170
anmK
Position (kb)
3665
3666
3667
3668 Strain fitness (log2 ratio)
-2
-1
0
1 at 3665.793 kb on - strand, within Shewana3_3059 at 3665.800 kb on - strand, within Shewana3_3059 at 3665.800 kb on - strand, within Shewana3_3059 at 3665.822 kb on - strand, within Shewana3_3059 at 3665.822 kb on - strand, within Shewana3_3059 at 3665.948 kb on - strand, within Shewana3_3059 at 3666.027 kb on - strand, within Shewana3_3059 at 3666.059 kb on + strand, within Shewana3_3059 at 3666.176 kb on - strand, within Shewana3_3059 at 3666.254 kb on - strand, within Shewana3_3059 at 3666.324 kb on - strand, within Shewana3_3059 at 3666.326 kb on + strand, within Shewana3_3059 at 3666.378 kb on + strand, within Shewana3_3059 at 3666.526 kb on + strand, within Shewana3_3059 at 3666.608 kb on - strand, within Shewana3_3059 at 3666.608 kb on - strand, within Shewana3_3059 at 3666.610 kb on - strand, within Shewana3_3059 at 3666.631 kb on - strand, within Shewana3_3059 at 3666.819 kb on - strand, within Shewana3_3059 at 3666.870 kb on + strand, within Shewana3_3059 at 3666.929 kb on + strand at 3666.929 kb on + strand at 3667.000 kb on + strand at 3667.209 kb on + strand, within anmK at 3667.209 kb on + strand, within anmK at 3667.506 kb on - strand, within anmK at 3667.517 kb on - strand, within anmK at 3667.617 kb on - strand, within anmK at 3667.820 kb on - strand, within anmK
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.064 mg/ml remove 3,665,793 - Shewana3_3059 0.11 -1.0 3,665,800 - Shewana3_3059 0.11 +0.1 3,665,800 - Shewana3_3059 0.11 -0.4 3,665,822 - Shewana3_3059 0.13 -1.2 3,665,822 - Shewana3_3059 0.13 +1.6 3,665,948 - Shewana3_3059 0.22 -1.1 3,666,027 - Shewana3_3059 0.28 -0.8 3,666,059 + Shewana3_3059 0.30 -0.9 3,666,176 - Shewana3_3059 0.38 -1.5 3,666,254 - Shewana3_3059 0.44 -1.2 3,666,324 - Shewana3_3059 0.49 -2.1 3,666,326 + Shewana3_3059 0.49 +0.8 3,666,378 + Shewana3_3059 0.53 -0.0 3,666,526 + Shewana3_3059 0.63 -0.2 3,666,608 - Shewana3_3059 0.69 -1.1 3,666,608 - Shewana3_3059 0.69 -0.6 3,666,610 - Shewana3_3059 0.69 -0.6 3,666,631 - Shewana3_3059 0.71 -0.1 3,666,819 - Shewana3_3059 0.84 +0.3 3,666,870 + Shewana3_3059 0.88 -0.7 3,666,929 + +0.3 3,666,929 + -0.4 3,667,000 + +1.0 3,667,209 + anmK Shewana3_3060 0.13 -0.3 3,667,209 + anmK Shewana3_3060 0.13 +0.3 3,667,506 - anmK Shewana3_3060 0.40 -0.5 3,667,517 - anmK Shewana3_3060 0.41 +0.6 3,667,617 - anmK Shewana3_3060 0.50 -0.3 3,667,820 - anmK Shewana3_3060 0.68 -1.3
Or see this region's nucleotide sequence