Experiment: Thallium(I) acetate 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2936 and Shewana3_2937 are separated by 58 nucleotides Shewana3_2937 and Shewana3_2938 are separated by 306 nucleotides
Shewana3_2936: Shewana3_2936 - peptidyl-prolyl cis-trans isomerase, cyclophilin type (RefSeq), at 3,526,850 to 3,527,485
_2936
Shewana3_2937: Shewana3_2937 - MarR family transcriptional regulator (RefSeq), at 3,527,544 to 3,528,041
_2937
Shewana3_2938: Shewana3_2938 - iron-containing alcohol dehydrogenase (RefSeq), at 3,528,348 to 3,529,496
_2938
Position (kb)
3527
3528
3529 Strain fitness (log2 ratio)
-2
-1
0
1 at 3526.577 kb on - strand at 3526.964 kb on + strand, within Shewana3_2936 at 3526.977 kb on + strand, within Shewana3_2936 at 3527.015 kb on + strand, within Shewana3_2936 at 3527.040 kb on + strand, within Shewana3_2936 at 3527.273 kb on + strand, within Shewana3_2936 at 3527.328 kb on + strand, within Shewana3_2936 at 3527.328 kb on + strand, within Shewana3_2936 at 3527.336 kb on - strand, within Shewana3_2936 at 3527.376 kb on - strand, within Shewana3_2936 at 3527.383 kb on + strand, within Shewana3_2936 at 3527.388 kb on + strand, within Shewana3_2936 at 3527.391 kb on - strand, within Shewana3_2936 at 3527.508 kb on + strand at 3527.585 kb on - strand at 3527.602 kb on + strand, within Shewana3_2937 at 3527.980 kb on + strand, within Shewana3_2937 at 3528.259 kb on - strand at 3528.473 kb on - strand, within Shewana3_2938 at 3528.542 kb on - strand, within Shewana3_2938 at 3528.556 kb on + strand, within Shewana3_2938 at 3528.580 kb on - strand, within Shewana3_2938 at 3528.942 kb on + strand, within Shewana3_2938 at 3528.942 kb on + strand, within Shewana3_2938 at 3528.950 kb on - strand, within Shewana3_2938 at 3529.008 kb on - strand, within Shewana3_2938 at 3529.008 kb on - strand, within Shewana3_2938 at 3529.011 kb on + strand, within Shewana3_2938 at 3529.019 kb on - strand, within Shewana3_2938
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.064 mg/ml remove 3,526,577 - -0.1 3,526,964 + Shewana3_2936 0.18 -0.2 3,526,977 + Shewana3_2936 0.20 -1.3 3,527,015 + Shewana3_2936 0.26 -0.3 3,527,040 + Shewana3_2936 0.30 +0.1 3,527,273 + Shewana3_2936 0.67 +0.3 3,527,328 + Shewana3_2936 0.75 +0.3 3,527,328 + Shewana3_2936 0.75 +0.3 3,527,336 - Shewana3_2936 0.76 -0.1 3,527,376 - Shewana3_2936 0.83 -0.3 3,527,383 + Shewana3_2936 0.84 +0.9 3,527,388 + Shewana3_2936 0.85 +1.0 3,527,391 - Shewana3_2936 0.85 -2.6 3,527,508 + +0.4 3,527,585 - +0.6 3,527,602 + Shewana3_2937 0.12 -0.6 3,527,980 + Shewana3_2937 0.88 -0.1 3,528,259 - +1.0 3,528,473 - Shewana3_2938 0.11 -0.0 3,528,542 - Shewana3_2938 0.17 +0.4 3,528,556 + Shewana3_2938 0.18 -0.1 3,528,580 - Shewana3_2938 0.20 -0.4 3,528,942 + Shewana3_2938 0.52 +1.4 3,528,942 + Shewana3_2938 0.52 +0.3 3,528,950 - Shewana3_2938 0.52 -0.4 3,529,008 - Shewana3_2938 0.57 -0.2 3,529,008 - Shewana3_2938 0.57 +0.8 3,529,011 + Shewana3_2938 0.58 +0.4 3,529,019 - Shewana3_2938 0.58 +0.0
Or see this region's nucleotide sequence