Experiment: Thallium(I) acetate 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2922 and Shewana3_2923 are separated by 227 nucleotides
Shewana3_2922: Shewana3_2922 - hypothetical protein (RefSeq), at 3,500,984 to 3,502,495
_2922
Shewana3_2923: Shewana3_2923 - multi anti extrusion protein MatE (RefSeq), at 3,502,723 to 3,504,075
_2923
Position (kb)
3500
3501
3502
3503 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3499.999 kb on - strand at 3499.999 kb on - strand at 3500.001 kb on + strand at 3500.009 kb on + strand at 3500.018 kb on + strand at 3500.018 kb on - strand at 3500.058 kb on - strand at 3500.060 kb on + strand at 3500.060 kb on - strand at 3500.068 kb on - strand at 3500.133 kb on - strand at 3500.140 kb on + strand at 3500.141 kb on - strand at 3500.150 kb on + strand at 3500.159 kb on - strand at 3500.163 kb on + strand at 3500.173 kb on + strand at 3500.333 kb on + strand at 3500.339 kb on - strand at 3500.398 kb on - strand at 3500.456 kb on + strand at 3500.472 kb on + strand at 3500.489 kb on + strand at 3500.489 kb on + strand at 3500.495 kb on - strand at 3500.526 kb on + strand at 3500.545 kb on + strand at 3500.588 kb on + strand at 3500.615 kb on + strand at 3500.615 kb on + strand at 3500.615 kb on + strand at 3500.623 kb on - strand at 3500.623 kb on - strand at 3500.715 kb on + strand at 3500.723 kb on - strand at 3500.794 kb on - strand at 3500.847 kb on + strand at 3500.984 kb on - strand at 3501.032 kb on - strand at 3501.296 kb on - strand, within Shewana3_2922 at 3501.375 kb on - strand, within Shewana3_2922 at 3501.614 kb on - strand, within Shewana3_2922 at 3501.719 kb on - strand, within Shewana3_2922 at 3501.762 kb on - strand, within Shewana3_2922 at 3501.922 kb on - strand, within Shewana3_2922 at 3502.037 kb on + strand, within Shewana3_2922 at 3502.258 kb on - strand, within Shewana3_2922 at 3502.427 kb on - strand at 3502.476 kb on - strand at 3502.566 kb on + strand at 3502.683 kb on - strand at 3502.869 kb on + strand, within Shewana3_2923 at 3503.006 kb on - strand, within Shewana3_2923 at 3503.071 kb on + strand, within Shewana3_2923 at 3503.073 kb on + strand, within Shewana3_2923 at 3503.081 kb on - strand, within Shewana3_2923 at 3503.126 kb on - strand, within Shewana3_2923 at 3503.126 kb on - strand, within Shewana3_2923 at 3503.128 kb on + strand, within Shewana3_2923 at 3503.286 kb on - strand, within Shewana3_2923 at 3503.295 kb on - strand, within Shewana3_2923 at 3503.390 kb on + strand, within Shewana3_2923 at 3503.447 kb on + strand, within Shewana3_2923 at 3503.447 kb on + strand, within Shewana3_2923
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.064 mg/ml remove 3,499,999 - +1.8 3,499,999 - -0.2 3,500,001 + -0.7 3,500,009 + +1.8 3,500,018 + -2.2 3,500,018 - +0.3 3,500,058 - +0.8 3,500,060 + +0.3 3,500,060 - -1.2 3,500,068 - -0.7 3,500,133 - +1.8 3,500,140 + -0.5 3,500,141 - +0.3 3,500,150 + +0.1 3,500,159 - +0.4 3,500,163 + +0.3 3,500,173 + -1.7 3,500,333 + -0.8 3,500,339 - -0.2 3,500,398 - +1.8 3,500,456 + +0.5 3,500,472 + -0.9 3,500,489 + +0.6 3,500,489 + +0.2 3,500,495 - -0.7 3,500,526 + +0.2 3,500,545 + +0.3 3,500,588 + -0.2 3,500,615 + -0.7 3,500,615 + -0.7 3,500,615 + -0.9 3,500,623 - -0.5 3,500,623 - +0.5 3,500,715 + +0.3 3,500,723 - -0.6 3,500,794 - +0.9 3,500,847 + -2.2 3,500,984 - -0.1 3,501,032 - +0.2 3,501,296 - Shewana3_2922 0.21 +0.7 3,501,375 - Shewana3_2922 0.26 +1.0 3,501,614 - Shewana3_2922 0.42 -0.2 3,501,719 - Shewana3_2922 0.49 +0.6 3,501,762 - Shewana3_2922 0.51 -0.6 3,501,922 - Shewana3_2922 0.62 +0.8 3,502,037 + Shewana3_2922 0.70 +1.8 3,502,258 - Shewana3_2922 0.84 +0.2 3,502,427 - +0.0 3,502,476 - -0.8 3,502,566 + -1.5 3,502,683 - -0.2 3,502,869 + Shewana3_2923 0.11 -0.1 3,503,006 - Shewana3_2923 0.21 +0.7 3,503,071 + Shewana3_2923 0.26 -0.8 3,503,073 + Shewana3_2923 0.26 -1.3 3,503,081 - Shewana3_2923 0.26 +0.8 3,503,126 - Shewana3_2923 0.30 +0.9 3,503,126 - Shewana3_2923 0.30 +0.5 3,503,128 + Shewana3_2923 0.30 -1.3 3,503,286 - Shewana3_2923 0.42 +1.2 3,503,295 - Shewana3_2923 0.42 -0.3 3,503,390 + Shewana3_2923 0.49 -0.7 3,503,447 + Shewana3_2923 0.54 -2.1 3,503,447 + Shewana3_2923 0.54 +0.3
Or see this region's nucleotide sequence