Experiment: Thallium(I) acetate 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2876 and Shewana3_2877 are separated by 492 nucleotides Shewana3_2877 and Shewana3_2878 are separated by 226 nucleotides
Shewana3_2876: Shewana3_2876 - response regulator receiver protein (RefSeq), at 3,438,741 to 3,440,555
_2876
Shewana3_2877: Shewana3_2877 - phosphate binding protein (RefSeq), at 3,441,048 to 3,442,019
_2877
Shewana3_2878: Shewana3_2878 - PAS/PAC sensor signal transduction histidine kinase (RefSeq), at 3,442,246 to 3,443,544
_2878
Position (kb)
3441
3442
3443 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3440.203 kb on - strand, within Shewana3_2876 at 3440.375 kb on + strand at 3440.388 kb on - strand at 3440.456 kb on - strand at 3440.817 kb on - strand at 3440.856 kb on + strand at 3440.856 kb on + strand at 3440.864 kb on - strand at 3440.886 kb on - strand at 3441.017 kb on + strand at 3441.147 kb on - strand, within Shewana3_2877 at 3441.147 kb on - strand, within Shewana3_2877 at 3441.147 kb on - strand, within Shewana3_2877 at 3441.435 kb on - strand, within Shewana3_2877 at 3441.789 kb on - strand, within Shewana3_2877 at 3442.371 kb on - strand at 3442.395 kb on - strand, within Shewana3_2878 at 3442.481 kb on + strand, within Shewana3_2878 at 3442.505 kb on - strand, within Shewana3_2878 at 3442.588 kb on - strand, within Shewana3_2878 at 3442.643 kb on + strand, within Shewana3_2878 at 3442.750 kb on - strand, within Shewana3_2878 at 3442.800 kb on + strand, within Shewana3_2878 at 3442.839 kb on + strand, within Shewana3_2878 at 3442.857 kb on + strand, within Shewana3_2878 at 3442.934 kb on + strand, within Shewana3_2878 at 3442.947 kb on - strand, within Shewana3_2878
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.064 mg/ml remove 3,440,203 - Shewana3_2876 0.81 +0.6 3,440,375 + +0.3 3,440,388 - +0.9 3,440,456 - -0.6 3,440,817 - -1.0 3,440,856 + -0.2 3,440,856 + +0.2 3,440,864 - -1.3 3,440,886 - -1.0 3,441,017 + -0.8 3,441,147 - Shewana3_2877 0.10 +0.8 3,441,147 - Shewana3_2877 0.10 +0.4 3,441,147 - Shewana3_2877 0.10 +1.0 3,441,435 - Shewana3_2877 0.40 +0.6 3,441,789 - Shewana3_2877 0.76 +0.2 3,442,371 - -1.6 3,442,395 - Shewana3_2878 0.11 +1.1 3,442,481 + Shewana3_2878 0.18 -0.8 3,442,505 - Shewana3_2878 0.20 -0.1 3,442,588 - Shewana3_2878 0.26 +0.1 3,442,643 + Shewana3_2878 0.31 +1.9 3,442,750 - Shewana3_2878 0.39 +0.4 3,442,800 + Shewana3_2878 0.43 +0.3 3,442,839 + Shewana3_2878 0.46 -0.6 3,442,857 + Shewana3_2878 0.47 -2.2 3,442,934 + Shewana3_2878 0.53 -0.4 3,442,947 - Shewana3_2878 0.54 -0.6
Or see this region's nucleotide sequence