Experiment: Thallium(I) acetate 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2867 and Shewana3_2868 are separated by 548 nucleotides Shewana3_2868 and Shewana3_2869 are separated by 240 nucleotides Shewana3_2869 and Shewana3_2870 are separated by 104 nucleotides
Shewana3_2867: Shewana3_2867 - Fmu (Sun) domain-containing protein (RefSeq), at 3,426,533 to 3,427,942
_2867
Shewana3_2868: Shewana3_2868 - hypothetical protein (RefSeq), at 3,428,491 to 3,428,655
_2868
Shewana3_2869: Shewana3_2869 - hypothetical protein (RefSeq), at 3,428,896 to 3,432,021
_2869
Shewana3_2870: Shewana3_2870 - diguanylate cyclase (RefSeq), at 3,432,126 to 3,433,793
_2870
Position (kb)
3428
3429
3430
3431
3432
3433 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3428.547 kb on + strand, within Shewana3_2868 at 3428.612 kb on - strand, within Shewana3_2868 at 3428.727 kb on + strand at 3428.736 kb on - strand at 3429.073 kb on - strand at 3429.122 kb on + strand at 3429.143 kb on + strand at 3429.144 kb on + strand at 3429.152 kb on - strand at 3429.159 kb on - strand at 3429.228 kb on - strand, within Shewana3_2869 at 3429.282 kb on - strand, within Shewana3_2869 at 3429.312 kb on + strand, within Shewana3_2869 at 3429.398 kb on - strand, within Shewana3_2869 at 3429.478 kb on - strand, within Shewana3_2869 at 3429.570 kb on + strand, within Shewana3_2869 at 3429.578 kb on - strand, within Shewana3_2869 at 3429.578 kb on - strand, within Shewana3_2869 at 3429.758 kb on + strand, within Shewana3_2869 at 3430.102 kb on + strand, within Shewana3_2869 at 3430.102 kb on + strand, within Shewana3_2869 at 3430.259 kb on + strand, within Shewana3_2869 at 3430.398 kb on + strand, within Shewana3_2869 at 3430.801 kb on + strand, within Shewana3_2869 at 3430.943 kb on - strand, within Shewana3_2869 at 3430.949 kb on + strand, within Shewana3_2869 at 3431.115 kb on - strand, within Shewana3_2869 at 3431.184 kb on + strand, within Shewana3_2869 at 3431.199 kb on + strand, within Shewana3_2869 at 3431.199 kb on + strand, within Shewana3_2869 at 3431.199 kb on + strand, within Shewana3_2869 at 3431.228 kb on - strand, within Shewana3_2869 at 3431.402 kb on + strand, within Shewana3_2869 at 3431.413 kb on - strand, within Shewana3_2869 at 3431.572 kb on + strand, within Shewana3_2869 at 3431.611 kb on - strand, within Shewana3_2869 at 3431.824 kb on - strand at 3431.838 kb on - strand at 3431.880 kb on - strand at 3432.004 kb on + strand at 3432.043 kb on - strand at 3432.115 kb on - strand at 3432.394 kb on + strand, within Shewana3_2870 at 3432.502 kb on + strand, within Shewana3_2870 at 3432.580 kb on - strand, within Shewana3_2870 at 3432.599 kb on + strand, within Shewana3_2870 at 3432.613 kb on + strand, within Shewana3_2870 at 3432.878 kb on - strand, within Shewana3_2870 at 3432.920 kb on - strand, within Shewana3_2870 at 3432.920 kb on - strand, within Shewana3_2870
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.064 mg/ml remove 3,428,547 + Shewana3_2868 0.34 +0.6 3,428,612 - Shewana3_2868 0.73 -0.9 3,428,727 + -0.4 3,428,736 - -1.5 3,429,073 - -1.5 3,429,122 + -0.7 3,429,143 + +1.8 3,429,144 + +0.1 3,429,152 - +0.7 3,429,159 - -1.1 3,429,228 - Shewana3_2869 0.11 -0.1 3,429,282 - Shewana3_2869 0.12 +0.8 3,429,312 + Shewana3_2869 0.13 -0.7 3,429,398 - Shewana3_2869 0.16 -0.7 3,429,478 - Shewana3_2869 0.19 -1.7 3,429,570 + Shewana3_2869 0.22 +0.3 3,429,578 - Shewana3_2869 0.22 +1.0 3,429,578 - Shewana3_2869 0.22 -0.5 3,429,758 + Shewana3_2869 0.28 -1.3 3,430,102 + Shewana3_2869 0.39 -1.8 3,430,102 + Shewana3_2869 0.39 -1.2 3,430,259 + Shewana3_2869 0.44 -0.0 3,430,398 + Shewana3_2869 0.48 -0.4 3,430,801 + Shewana3_2869 0.61 +0.3 3,430,943 - Shewana3_2869 0.65 -0.7 3,430,949 + Shewana3_2869 0.66 -0.9 3,431,115 - Shewana3_2869 0.71 -0.5 3,431,184 + Shewana3_2869 0.73 -1.3 3,431,199 + Shewana3_2869 0.74 -1.0 3,431,199 + Shewana3_2869 0.74 -0.9 3,431,199 + Shewana3_2869 0.74 +0.9 3,431,228 - Shewana3_2869 0.75 -0.1 3,431,402 + Shewana3_2869 0.80 +2.4 3,431,413 - Shewana3_2869 0.81 +0.0 3,431,572 + Shewana3_2869 0.86 +0.5 3,431,611 - Shewana3_2869 0.87 -1.3 3,431,824 - +1.1 3,431,838 - -0.4 3,431,880 - -0.5 3,432,004 + +1.0 3,432,043 - -1.1 3,432,115 - +0.7 3,432,394 + Shewana3_2870 0.16 +0.9 3,432,502 + Shewana3_2870 0.23 -0.6 3,432,580 - Shewana3_2870 0.27 +0.2 3,432,599 + Shewana3_2870 0.28 +1.3 3,432,613 + Shewana3_2870 0.29 -0.8 3,432,878 - Shewana3_2870 0.45 -0.4 3,432,920 - Shewana3_2870 0.48 +0.3 3,432,920 - Shewana3_2870 0.48 +0.0
Or see this region's nucleotide sequence