Experiment: Thallium(I) acetate 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2846 and Shewana3_2847 are separated by 177 nucleotides Shewana3_2847 and Shewana3_2848 are separated by 154 nucleotides Shewana3_2848 and Shewana3_2849 are separated by 85 nucleotides
Shewana3_2846: Shewana3_2846 - IS4 family transposase (RefSeq), at 3,406,480 to 3,408,093
_2846
Shewana3_2847: Shewana3_2847 - hypothetical protein (RefSeq), at 3,408,271 to 3,408,465
_2847
Shewana3_2848: Shewana3_2848 - hypothetical protein (RefSeq), at 3,408,620 to 3,410,317
_2848
Shewana3_2849: Shewana3_2849 - sigma-54 dependent trancsriptional regulator (RefSeq), at 3,410,403 to 3,411,812
_2849
Position (kb)
3408
3409
3410
3411 Strain fitness (log2 ratio)
-1
0
1 at 3408.221 kb on + strand at 3408.227 kb on + strand at 3408.235 kb on - strand at 3408.320 kb on + strand, within Shewana3_2847 at 3408.320 kb on + strand, within Shewana3_2847 at 3408.328 kb on - strand, within Shewana3_2847 at 3408.328 kb on - strand, within Shewana3_2847 at 3408.345 kb on + strand, within Shewana3_2847 at 3408.481 kb on + strand at 3408.538 kb on + strand at 3408.655 kb on + strand at 3409.025 kb on - strand, within Shewana3_2848 at 3409.062 kb on + strand, within Shewana3_2848 at 3409.193 kb on - strand, within Shewana3_2848 at 3409.193 kb on - strand, within Shewana3_2848 at 3409.219 kb on - strand, within Shewana3_2848 at 3409.289 kb on - strand, within Shewana3_2848 at 3409.315 kb on + strand, within Shewana3_2848 at 3409.315 kb on + strand, within Shewana3_2848 at 3409.342 kb on + strand, within Shewana3_2848 at 3409.662 kb on - strand, within Shewana3_2848 at 3409.714 kb on - strand, within Shewana3_2848 at 3409.923 kb on + strand, within Shewana3_2848 at 3409.931 kb on - strand, within Shewana3_2848 at 3409.946 kb on + strand, within Shewana3_2848 at 3409.954 kb on - strand, within Shewana3_2848 at 3410.139 kb on + strand, within Shewana3_2848 at 3411.010 kb on - strand, within Shewana3_2849 at 3411.027 kb on - strand, within Shewana3_2849 at 3411.182 kb on - strand, within Shewana3_2849 at 3411.284 kb on - strand, within Shewana3_2849
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.064 mg/ml remove 3,408,221 + +0.7 3,408,227 + -0.1 3,408,235 - +0.9 3,408,320 + Shewana3_2847 0.25 +0.2 3,408,320 + Shewana3_2847 0.25 +0.7 3,408,328 - Shewana3_2847 0.29 +0.3 3,408,328 - Shewana3_2847 0.29 +0.0 3,408,345 + Shewana3_2847 0.38 +0.2 3,408,481 + +0.9 3,408,538 + -0.4 3,408,655 + -0.8 3,409,025 - Shewana3_2848 0.24 -0.9 3,409,062 + Shewana3_2848 0.26 +0.4 3,409,193 - Shewana3_2848 0.34 +0.1 3,409,193 - Shewana3_2848 0.34 -0.4 3,409,219 - Shewana3_2848 0.35 +0.5 3,409,289 - Shewana3_2848 0.39 +0.3 3,409,315 + Shewana3_2848 0.41 -0.6 3,409,315 + Shewana3_2848 0.41 +0.7 3,409,342 + Shewana3_2848 0.43 -1.1 3,409,662 - Shewana3_2848 0.61 +0.5 3,409,714 - Shewana3_2848 0.64 -0.6 3,409,923 + Shewana3_2848 0.77 -1.3 3,409,931 - Shewana3_2848 0.77 -0.0 3,409,946 + Shewana3_2848 0.78 -1.1 3,409,954 - Shewana3_2848 0.79 +0.9 3,410,139 + Shewana3_2848 0.89 -0.1 3,411,010 - Shewana3_2849 0.43 -0.9 3,411,027 - Shewana3_2849 0.44 +0.1 3,411,182 - Shewana3_2849 0.55 -1.5 3,411,284 - Shewana3_2849 0.62 -0.8
Or see this region's nucleotide sequence