Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2764

Experiment: Thallium(I) acetate 0.064 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_2763 and Shewana3_2764 are separated by 58 nucleotidesShewana3_2764 and fabG are separated by 207 nucleotidesfabG and Shewana3_2766 are separated by 19 nucleotides Shewana3_2763: Shewana3_2763 - peptidase S9 prolyl oligopeptidase (RefSeq), at 3,301,029 to 3,303,062 _2763 Shewana3_2764: Shewana3_2764 - hypothetical protein (RefSeq), at 3,303,121 to 3,303,363 _2764 Shewana3_2765: fabG - 3-ketoacyl-(acyl-carrier-protein) reductase (RefSeq), at 3,303,571 to 3,304,329 fabG Shewana3_2766: Shewana3_2766 - 3-hydroxyisobutyrate dehydrogenase (RefSeq), at 3,304,349 to 3,305,251 _2766 Position (kb) 3303 3304Strain fitness (log2 ratio) -1 0 1at 3302.195 kb on + strand, within Shewana3_2763at 3302.410 kb on - strand, within Shewana3_2763at 3302.481 kb on + strand, within Shewana3_2763at 3302.546 kb on + strand, within Shewana3_2763at 3302.815 kb on + strand, within Shewana3_2763at 3302.833 kb on - strand, within Shewana3_2763at 3303.344 kb on + strandat 3303.392 kb on - strandat 3303.642 kb on + strandat 3303.750 kb on + strand, within fabGat 3303.758 kb on - strand, within fabG

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.064 mg/ml
remove
3,302,195 + Shewana3_2763 0.57 -1.6
3,302,410 - Shewana3_2763 0.68 -0.3
3,302,481 + Shewana3_2763 0.71 -0.4
3,302,546 + Shewana3_2763 0.75 -0.5
3,302,815 + Shewana3_2763 0.88 -0.7
3,302,833 - Shewana3_2763 0.89 -0.9
3,303,344 + -0.1
3,303,392 - -1.1
3,303,642 + -1.4
3,303,750 + fabG Shewana3_2765 0.24 +0.9
3,303,758 - fabG Shewana3_2765 0.25 +0.3

Or see this region's nucleotide sequence