Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2761

Experiment: Thallium(I) acetate 0.064 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2760 and Shewana3_2761 are separated by 427 nucleotidesShewana3_2761 and Shewana3_2762 are separated by 136 nucleotidesShewana3_2762 and Shewana3_2763 are separated by 102 nucleotides Shewana3_2760: Shewana3_2760 - ABC transporter related (RefSeq), at 3,296,071 to 3,297,711 _2760 Shewana3_2761: Shewana3_2761 - copper-translocating P-type ATPase (RefSeq), at 3,298,139 to 3,300,400 _2761 Shewana3_2762: Shewana3_2762 - MerR family transcriptional regulator (RefSeq), at 3,300,537 to 3,300,926 _2762 Shewana3_2763: Shewana3_2763 - peptidase S9 prolyl oligopeptidase (RefSeq), at 3,301,029 to 3,303,062 _2763 Position (kb) 3298 3299 3300 3301Strain fitness (log2 ratio) -2 -1 0 1at 3297.390 kb on + strand, within Shewana3_2760at 3297.413 kb on - strand, within Shewana3_2760at 3297.680 kb on + strandat 3297.716 kb on + strandat 3297.957 kb on - strandat 3297.983 kb on - strandat 3298.003 kb on + strandat 3298.031 kb on - strandat 3298.153 kb on + strandat 3298.241 kb on - strandat 3298.441 kb on + strand, within Shewana3_2761at 3298.480 kb on + strand, within Shewana3_2761at 3298.568 kb on + strand, within Shewana3_2761at 3298.627 kb on + strand, within Shewana3_2761at 3298.680 kb on + strand, within Shewana3_2761at 3298.746 kb on + strand, within Shewana3_2761at 3298.919 kb on + strand, within Shewana3_2761at 3298.949 kb on - strand, within Shewana3_2761at 3298.984 kb on - strand, within Shewana3_2761at 3299.018 kb on + strand, within Shewana3_2761at 3299.031 kb on - strand, within Shewana3_2761at 3299.248 kb on - strand, within Shewana3_2761at 3299.284 kb on - strand, within Shewana3_2761at 3299.289 kb on - strand, within Shewana3_2761at 3299.290 kb on - strand, within Shewana3_2761at 3299.375 kb on - strand, within Shewana3_2761at 3299.421 kb on - strand, within Shewana3_2761at 3299.438 kb on - strand, within Shewana3_2761at 3299.481 kb on - strand, within Shewana3_2761at 3299.507 kb on + strand, within Shewana3_2761at 3299.582 kb on - strand, within Shewana3_2761at 3299.628 kb on + strand, within Shewana3_2761at 3299.645 kb on + strand, within Shewana3_2761at 3299.664 kb on + strand, within Shewana3_2761at 3299.838 kb on - strand, within Shewana3_2761at 3299.887 kb on + strand, within Shewana3_2761at 3299.887 kb on + strand, within Shewana3_2761at 3299.900 kb on - strand, within Shewana3_2761at 3299.900 kb on - strand, within Shewana3_2761at 3299.900 kb on - strand, within Shewana3_2761at 3299.997 kb on - strand, within Shewana3_2761at 3300.509 kb on + strandat 3300.567 kb on + strandat 3300.567 kb on + strandat 3300.575 kb on - strandat 3300.619 kb on - strand, within Shewana3_2762at 3301.138 kb on + strandat 3301.146 kb on - strandat 3301.258 kb on - strand, within Shewana3_2763

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.064 mg/ml
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3,297,390 + Shewana3_2760 0.80 +1.2
3,297,413 - Shewana3_2760 0.82 -2.7
3,297,680 + +0.3
3,297,716 + -0.1
3,297,957 - +0.6
3,297,983 - -1.2
3,298,003 + +1.3
3,298,031 - -1.2
3,298,153 + -0.3
3,298,241 - +1.0
3,298,441 + Shewana3_2761 0.13 -0.4
3,298,480 + Shewana3_2761 0.15 +0.3
3,298,568 + Shewana3_2761 0.19 -1.4
3,298,627 + Shewana3_2761 0.22 -0.3
3,298,680 + Shewana3_2761 0.24 -0.4
3,298,746 + Shewana3_2761 0.27 +0.6
3,298,919 + Shewana3_2761 0.34 -0.1
3,298,949 - Shewana3_2761 0.36 +0.3
3,298,984 - Shewana3_2761 0.37 -0.0
3,299,018 + Shewana3_2761 0.39 -0.8
3,299,031 - Shewana3_2761 0.39 -0.4
3,299,248 - Shewana3_2761 0.49 +0.8
3,299,284 - Shewana3_2761 0.51 -0.1
3,299,289 - Shewana3_2761 0.51 -0.4
3,299,290 - Shewana3_2761 0.51 -1.2
3,299,375 - Shewana3_2761 0.55 +1.1
3,299,421 - Shewana3_2761 0.57 +0.1
3,299,438 - Shewana3_2761 0.57 -0.7
3,299,481 - Shewana3_2761 0.59 -2.2
3,299,507 + Shewana3_2761 0.60 -1.8
3,299,582 - Shewana3_2761 0.64 -0.5
3,299,628 + Shewana3_2761 0.66 -0.6
3,299,645 + Shewana3_2761 0.67 -0.2
3,299,664 + Shewana3_2761 0.67 +0.9
3,299,838 - Shewana3_2761 0.75 -0.2
3,299,887 + Shewana3_2761 0.77 +0.3
3,299,887 + Shewana3_2761 0.77 -0.5
3,299,900 - Shewana3_2761 0.78 +1.0
3,299,900 - Shewana3_2761 0.78 -0.1
3,299,900 - Shewana3_2761 0.78 +0.3
3,299,997 - Shewana3_2761 0.82 -0.9
3,300,509 + -0.3
3,300,567 + -0.1
3,300,567 + +0.3
3,300,575 - -0.1
3,300,619 - Shewana3_2762 0.21 -0.7
3,301,138 + -1.1
3,301,146 - +0.6
3,301,258 - Shewana3_2763 0.11 +0.4

Or see this region's nucleotide sequence