Experiment: Thallium(I) acetate 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2686 and Shewana3_2687 are separated by 496 nucleotides Shewana3_2687 and Shewana3_2688 are separated by 783 nucleotides
Shewana3_2686: Shewana3_2686 - pyridoxal-dependent decarboxylase (RefSeq), at 3,212,207 to 3,213,856
_2686
Shewana3_2687: Shewana3_2687 - NAD-dependent DNA ligase (RefSeq), at 3,214,353 to 3,215,249
_2687
Shewana3_2688: Shewana3_2688 - hypothetical protein (RefSeq), at 3,216,033 to 3,216,488
_2688
Position (kb)
3214
3215
3216 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 3213.875 kb on + strand at 3213.895 kb on - strand at 3214.005 kb on - strand at 3214.054 kb on - strand at 3214.054 kb on - strand at 3214.054 kb on - strand at 3214.065 kb on - strand at 3214.196 kb on + strand at 3214.228 kb on + strand at 3214.229 kb on - strand at 3214.229 kb on - strand at 3214.363 kb on - strand at 3214.461 kb on + strand, within Shewana3_2687 at 3214.469 kb on - strand, within Shewana3_2687 at 3214.487 kb on + strand, within Shewana3_2687 at 3214.487 kb on - strand, within Shewana3_2687 at 3214.492 kb on - strand, within Shewana3_2687 at 3214.506 kb on - strand, within Shewana3_2687 at 3214.506 kb on - strand, within Shewana3_2687 at 3214.592 kb on - strand, within Shewana3_2687 at 3214.646 kb on + strand, within Shewana3_2687 at 3214.646 kb on + strand, within Shewana3_2687 at 3214.646 kb on + strand, within Shewana3_2687 at 3214.646 kb on + strand, within Shewana3_2687 at 3214.646 kb on + strand, within Shewana3_2687 at 3214.646 kb on + strand, within Shewana3_2687 at 3214.646 kb on + strand, within Shewana3_2687 at 3214.646 kb on + strand, within Shewana3_2687 at 3214.646 kb on + strand, within Shewana3_2687 at 3214.646 kb on + strand, within Shewana3_2687 at 3214.649 kb on - strand, within Shewana3_2687 at 3214.654 kb on - strand, within Shewana3_2687 at 3214.654 kb on - strand, within Shewana3_2687 at 3214.654 kb on - strand, within Shewana3_2687 at 3214.654 kb on - strand, within Shewana3_2687 at 3214.654 kb on - strand, within Shewana3_2687 at 3214.654 kb on - strand, within Shewana3_2687 at 3214.654 kb on - strand, within Shewana3_2687 at 3214.654 kb on - strand, within Shewana3_2687 at 3214.654 kb on - strand, within Shewana3_2687 at 3214.654 kb on - strand, within Shewana3_2687 at 3214.654 kb on - strand, within Shewana3_2687 at 3214.654 kb on - strand, within Shewana3_2687 at 3214.654 kb on - strand, within Shewana3_2687 at 3214.654 kb on - strand, within Shewana3_2687 at 3214.654 kb on - strand, within Shewana3_2687 at 3214.654 kb on - strand, within Shewana3_2687 at 3214.654 kb on - strand, within Shewana3_2687 at 3214.654 kb on - strand, within Shewana3_2687 at 3214.654 kb on - strand, within Shewana3_2687 at 3214.654 kb on - strand, within Shewana3_2687 at 3214.659 kb on - strand, within Shewana3_2687 at 3214.782 kb on + strand, within Shewana3_2687 at 3214.792 kb on + strand, within Shewana3_2687 at 3214.800 kb on - strand, within Shewana3_2687 at 3214.800 kb on - strand, within Shewana3_2687 at 3214.916 kb on - strand, within Shewana3_2687 at 3214.923 kb on - strand, within Shewana3_2687 at 3214.931 kb on - strand, within Shewana3_2687 at 3215.018 kb on - strand, within Shewana3_2687 at 3215.030 kb on - strand, within Shewana3_2687 at 3215.095 kb on + strand, within Shewana3_2687 at 3215.098 kb on - strand, within Shewana3_2687 at 3215.103 kb on - strand at 3215.103 kb on - strand, within Shewana3_2687 at 3215.105 kb on + strand, within Shewana3_2687 at 3215.105 kb on + strand, within Shewana3_2687 at 3215.108 kb on - strand, within Shewana3_2687 at 3215.113 kb on - strand, within Shewana3_2687 at 3215.163 kb on + strand at 3215.163 kb on + strand at 3215.194 kb on - strand at 3215.202 kb on + strand at 3215.202 kb on + strand at 3215.202 kb on + strand at 3215.202 kb on + strand at 3215.202 kb on + strand at 3215.203 kb on + strand at 3215.203 kb on + strand at 3215.210 kb on - strand at 3215.210 kb on - strand at 3215.210 kb on - strand at 3215.210 kb on - strand at 3215.210 kb on - strand at 3215.210 kb on - strand at 3215.218 kb on + strand at 3215.257 kb on - strand at 3215.259 kb on - strand at 3215.284 kb on - strand at 3215.289 kb on - strand at 3215.344 kb on + strand at 3215.347 kb on - strand at 3215.352 kb on - strand at 3215.352 kb on - strand at 3215.371 kb on + strand at 3215.430 kb on - strand at 3215.466 kb on - strand at 3215.490 kb on + strand at 3215.515 kb on - strand at 3215.515 kb on - strand at 3215.615 kb on - strand at 3215.874 kb on + strand at 3215.882 kb on - strand at 3215.882 kb on - strand at 3215.977 kb on - strand at 3216.096 kb on + strand, within Shewana3_2688 at 3216.143 kb on + strand, within Shewana3_2688
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.064 mg/ml remove 3,213,875 + -0.4 3,213,895 - +2.0 3,214,005 - -1.9 3,214,054 - -0.4 3,214,054 - -0.1 3,214,054 - +0.6 3,214,065 - +0.1 3,214,196 + -0.6 3,214,228 + -1.9 3,214,229 - +1.0 3,214,229 - +0.2 3,214,363 - -0.8 3,214,461 + Shewana3_2687 0.12 -1.3 3,214,469 - Shewana3_2687 0.13 -0.2 3,214,487 + Shewana3_2687 0.15 -0.2 3,214,487 - Shewana3_2687 0.15 +0.0 3,214,492 - Shewana3_2687 0.15 -0.3 3,214,506 - Shewana3_2687 0.17 -0.1 3,214,506 - Shewana3_2687 0.17 -1.4 3,214,592 - Shewana3_2687 0.27 -1.1 3,214,646 + Shewana3_2687 0.33 -0.0 3,214,646 + Shewana3_2687 0.33 -1.2 3,214,646 + Shewana3_2687 0.33 +0.4 3,214,646 + Shewana3_2687 0.33 -0.8 3,214,646 + Shewana3_2687 0.33 +0.4 3,214,646 + Shewana3_2687 0.33 +1.0 3,214,646 + Shewana3_2687 0.33 -0.6 3,214,646 + Shewana3_2687 0.33 -0.0 3,214,646 + Shewana3_2687 0.33 -1.5 3,214,646 + Shewana3_2687 0.33 +1.0 3,214,649 - Shewana3_2687 0.33 +0.5 3,214,654 - Shewana3_2687 0.34 -1.2 3,214,654 - Shewana3_2687 0.34 +0.8 3,214,654 - Shewana3_2687 0.34 +0.4 3,214,654 - Shewana3_2687 0.34 -0.6 3,214,654 - Shewana3_2687 0.34 -1.6 3,214,654 - Shewana3_2687 0.34 +0.7 3,214,654 - Shewana3_2687 0.34 -1.9 3,214,654 - Shewana3_2687 0.34 -2.1 3,214,654 - Shewana3_2687 0.34 +2.0 3,214,654 - Shewana3_2687 0.34 -1.2 3,214,654 - Shewana3_2687 0.34 -1.2 3,214,654 - Shewana3_2687 0.34 -0.1 3,214,654 - Shewana3_2687 0.34 -1.8 3,214,654 - Shewana3_2687 0.34 -1.2 3,214,654 - Shewana3_2687 0.34 -0.1 3,214,654 - Shewana3_2687 0.34 -2.4 3,214,654 - Shewana3_2687 0.34 -0.9 3,214,654 - Shewana3_2687 0.34 -0.6 3,214,654 - Shewana3_2687 0.34 +4.0 3,214,654 - Shewana3_2687 0.34 -1.1 3,214,659 - Shewana3_2687 0.34 +0.4 3,214,782 + Shewana3_2687 0.48 +2.0 3,214,792 + Shewana3_2687 0.49 -1.2 3,214,800 - Shewana3_2687 0.50 +0.2 3,214,800 - Shewana3_2687 0.50 -0.1 3,214,916 - Shewana3_2687 0.63 +0.8 3,214,923 - Shewana3_2687 0.64 -0.3 3,214,931 - Shewana3_2687 0.64 +0.9 3,215,018 - Shewana3_2687 0.74 +0.2 3,215,030 - Shewana3_2687 0.75 +1.0 3,215,095 + Shewana3_2687 0.83 -2.5 3,215,098 - Shewana3_2687 0.83 -1.2 3,215,103 - +1.0 3,215,103 - Shewana3_2687 0.84 +1.0 3,215,105 + Shewana3_2687 0.84 +2.0 3,215,105 + Shewana3_2687 0.84 +3.0 3,215,108 - Shewana3_2687 0.84 -0.6 3,215,113 - Shewana3_2687 0.85 +0.4 3,215,163 + +2.0 3,215,163 + -1.6 3,215,194 - -0.1 3,215,202 + -0.8 3,215,202 + +0.4 3,215,202 + +1.0 3,215,202 + -1.3 3,215,202 + -0.0 3,215,203 + -1.2 3,215,203 + -0.3 3,215,210 - -1.5 3,215,210 - -2.8 3,215,210 - +0.7 3,215,210 - -1.0 3,215,210 - +0.4 3,215,210 - -0.5 3,215,218 + -0.3 3,215,257 - +0.1 3,215,259 - -2.3 3,215,284 - +0.1 3,215,289 - -0.8 3,215,344 + +1.0 3,215,347 - +0.3 3,215,352 - +1.0 3,215,352 - +0.8 3,215,371 + -0.3 3,215,430 - -1.6 3,215,466 - +0.4 3,215,490 + -1.1 3,215,515 - +1.3 3,215,515 - -1.2 3,215,615 - +1.0 3,215,874 + -0.0 3,215,882 - -0.3 3,215,882 - +0.1 3,215,977 - -2.9 3,216,096 + Shewana3_2688 0.14 -0.3 3,216,143 + Shewana3_2688 0.24 -0.8
Or see this region's nucleotide sequence