Experiment: Thallium(I) acetate 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2612 and Shewana3_2613 are separated by 280 nucleotides Shewana3_2613 and Shewana3_2614 are separated by 48 nucleotides
Shewana3_2612: Shewana3_2612 - exodeoxyribonuclease I subunit D (RefSeq), at 3,118,622 to 3,119,824
_2612
Shewana3_2613: Shewana3_2613 - hypothetical protein (RefSeq), at 3,120,105 to 3,120,914
_2613
Shewana3_2614: Shewana3_2614 - LysR family transcriptional regulator (RefSeq), at 3,120,963 to 3,121,925
_2614
Position (kb)
3120
3121 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3119.309 kb on + strand, within Shewana3_2612 at 3119.435 kb on - strand, within Shewana3_2612 at 3119.557 kb on - strand, within Shewana3_2612 at 3119.600 kb on + strand, within Shewana3_2612 at 3119.719 kb on - strand at 3119.884 kb on - strand at 3120.023 kb on + strand at 3120.054 kb on - strand at 3120.081 kb on + strand at 3120.220 kb on - strand, within Shewana3_2613 at 3120.329 kb on - strand, within Shewana3_2613 at 3120.407 kb on - strand, within Shewana3_2613 at 3120.646 kb on - strand, within Shewana3_2613 at 3120.678 kb on + strand, within Shewana3_2613 at 3120.759 kb on + strand, within Shewana3_2613 at 3121.086 kb on + strand, within Shewana3_2614 at 3121.087 kb on - strand, within Shewana3_2614 at 3121.109 kb on - strand, within Shewana3_2614 at 3121.311 kb on + strand, within Shewana3_2614 at 3121.311 kb on - strand, within Shewana3_2614 at 3121.452 kb on - strand, within Shewana3_2614 at 3121.462 kb on + strand, within Shewana3_2614 at 3121.727 kb on - strand, within Shewana3_2614 at 3121.776 kb on - strand, within Shewana3_2614 at 3121.788 kb on + strand, within Shewana3_2614 at 3121.796 kb on - strand, within Shewana3_2614 at 3121.796 kb on - strand, within Shewana3_2614 at 3121.796 kb on - strand, within Shewana3_2614 at 3121.832 kb on - strand at 3121.908 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.064 mg/ml remove 3,119,309 + Shewana3_2612 0.57 +0.9 3,119,435 - Shewana3_2612 0.68 +0.2 3,119,557 - Shewana3_2612 0.78 -0.3 3,119,600 + Shewana3_2612 0.81 -0.3 3,119,719 - -0.0 3,119,884 - +0.4 3,120,023 + -0.4 3,120,054 - +0.7 3,120,081 + -1.3 3,120,220 - Shewana3_2613 0.14 +0.0 3,120,329 - Shewana3_2613 0.28 +0.6 3,120,407 - Shewana3_2613 0.37 +0.7 3,120,646 - Shewana3_2613 0.67 +0.8 3,120,678 + Shewana3_2613 0.71 +0.4 3,120,759 + Shewana3_2613 0.81 +0.8 3,121,086 + Shewana3_2614 0.13 +2.0 3,121,087 - Shewana3_2614 0.13 -0.0 3,121,109 - Shewana3_2614 0.15 +0.5 3,121,311 + Shewana3_2614 0.36 -1.8 3,121,311 - Shewana3_2614 0.36 -1.2 3,121,452 - Shewana3_2614 0.51 -0.2 3,121,462 + Shewana3_2614 0.52 +1.0 3,121,727 - Shewana3_2614 0.79 -1.1 3,121,776 - Shewana3_2614 0.84 -0.8 3,121,788 + Shewana3_2614 0.86 +0.4 3,121,796 - Shewana3_2614 0.87 -1.2 3,121,796 - Shewana3_2614 0.87 +1.6 3,121,796 - Shewana3_2614 0.87 +0.7 3,121,832 - +0.4 3,121,908 + -0.2
Or see this region's nucleotide sequence