Experiment: Thallium(I) acetate 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2537 and Shewana3_2538 are separated by 116 nucleotides Shewana3_2538 and Shewana3_2539 are separated by 116 nucleotides Shewana3_2539 and Shewana3_2540 are separated by 142 nucleotides Shewana3_2540 and Shewana3_2541 are separated by 74 nucleotides
Shewana3_2537: Shewana3_2537 - FAD-dependent pyridine nucleotide-disulphide oxidoreductase (RefSeq), at 3,034,462 to 3,035,361
_2537
Shewana3_2538: Shewana3_2538 - BadM/Rrf2 family transcriptional regulator (RefSeq), at 3,035,478 to 3,035,891
_2538
Shewana3_2539: Shewana3_2539 - OmpA/MotB domain-containing protein (RefSeq), at 3,036,008 to 3,036,880
_2539
Shewana3_2540: Shewana3_2540 - ribonuclease T (RefSeq), at 3,037,023 to 3,037,691
_2540
Shewana3_2541: Shewana3_2541 - alkyl hydroperoxide reductase/Thiol specific antioxidant/Mal allergen (RefSeq), at 3,037,766 to 3,038,371
_2541
Position (kb)
3036
3037 Strain fitness (log2 ratio)
-1
0
1
2 at 3035.313 kb on + strand at 3035.970 kb on + strand at 3036.044 kb on + strand at 3036.103 kb on + strand, within Shewana3_2539 at 3036.125 kb on - strand, within Shewana3_2539 at 3036.541 kb on - strand, within Shewana3_2539 at 3036.541 kb on - strand, within Shewana3_2539 at 3036.613 kb on - strand, within Shewana3_2539 at 3036.613 kb on - strand, within Shewana3_2539 at 3036.631 kb on - strand, within Shewana3_2539 at 3036.645 kb on - strand, within Shewana3_2539 at 3036.805 kb on + strand at 3037.106 kb on + strand, within Shewana3_2540 at 3037.206 kb on + strand, within Shewana3_2540 at 3037.572 kb on + strand, within Shewana3_2540 at 3037.728 kb on + strand at 3037.820 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.064 mg/ml remove 3,035,313 + +0.4 3,035,970 + +0.4 3,036,044 + -1.1 3,036,103 + Shewana3_2539 0.11 +0.3 3,036,125 - Shewana3_2539 0.13 +1.3 3,036,541 - Shewana3_2539 0.61 +1.3 3,036,541 - Shewana3_2539 0.61 +0.7 3,036,613 - Shewana3_2539 0.69 +1.4 3,036,613 - Shewana3_2539 0.69 +0.8 3,036,631 - Shewana3_2539 0.71 +1.1 3,036,645 - Shewana3_2539 0.73 +0.3 3,036,805 + +1.0 3,037,106 + Shewana3_2540 0.12 +1.0 3,037,206 + Shewana3_2540 0.27 +1.0 3,037,572 + Shewana3_2540 0.82 +0.0 3,037,728 + +0.4 3,037,820 + +2.0
Or see this region's nucleotide sequence