Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2440

Experiment: Thallium(I) acetate 0.064 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2439 and hemH are separated by 189 nucleotideshemH and adk are separated by 79 nucleotidesadk and Shewana3_2442 are separated by 141 nucleotides Shewana3_2439: Shewana3_2439 - inosine-guanosine kinase (RefSeq), at 2,925,022 to 2,926,326 _2439 Shewana3_2440: hemH - ferrochelatase (RefSeq), at 2,926,516 to 2,927,562 hemH Shewana3_2441: adk - adenylate kinase (RefSeq), at 2,927,642 to 2,928,286 adk Shewana3_2442: Shewana3_2442 - thioredoxin domain-containing protein (RefSeq), at 2,928,428 to 2,929,291 _2442 Position (kb) 2926 2927 2928Strain fitness (log2 ratio) -1 0 1at 2925.649 kb on + strand, within Shewana3_2439at 2925.803 kb on - strand, within Shewana3_2439at 2926.041 kb on + strand, within Shewana3_2439at 2926.234 kb on + strandat 2926.234 kb on + strandat 2926.872 kb on + strand, within hemHat 2926.877 kb on + strand, within hemHat 2926.877 kb on + strand, within hemHat 2926.877 kb on + strand, within hemHat 2926.880 kb on - strand, within hemHat 2926.885 kb on - strand, within hemHat 2927.034 kb on + strand, within hemHat 2927.140 kb on + strand, within hemHat 2927.296 kb on + strand, within hemHat 2927.355 kb on + strand, within hemHat 2927.363 kb on - strand, within hemHat 2927.414 kb on - strand, within hemHat 2928.434 kb on + strandat 2928.561 kb on + strand, within Shewana3_2442

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.064 mg/ml
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2,925,649 + Shewana3_2439 0.48 -1.2
2,925,803 - Shewana3_2439 0.60 +1.1
2,926,041 + Shewana3_2439 0.78 -1.1
2,926,234 + -0.4
2,926,234 + +0.8
2,926,872 + hemH Shewana3_2440 0.34 +1.1
2,926,877 + hemH Shewana3_2440 0.34 +0.6
2,926,877 + hemH Shewana3_2440 0.34 +0.5
2,926,877 + hemH Shewana3_2440 0.34 -0.1
2,926,880 - hemH Shewana3_2440 0.35 -0.2
2,926,885 - hemH Shewana3_2440 0.35 +0.5
2,927,034 + hemH Shewana3_2440 0.49 +1.1
2,927,140 + hemH Shewana3_2440 0.60 +1.5
2,927,296 + hemH Shewana3_2440 0.74 +0.3
2,927,355 + hemH Shewana3_2440 0.80 +0.8
2,927,363 - hemH Shewana3_2440 0.81 -0.9
2,927,414 - hemH Shewana3_2440 0.86 +1.1
2,928,434 + +0.5
2,928,561 + Shewana3_2442 0.15 -1.1

Or see this region's nucleotide sequence