Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2396

Experiment: Thallium(I) acetate 0.064 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrbgA and Shewana3_2396 are separated by 299 nucleotidesShewana3_2396 and Shewana3_2397 are separated by 286 nucleotidesShewana3_2397 and Shewana3_2398 are separated by 84 nucleotides Shewana3_2395: rbgA - ribosomal biogenesis GTPase (RefSeq), at 2,874,207 to 2,875,148 rbgA Shewana3_2396: Shewana3_2396 - hypothetical protein (RefSeq), at 2,875,448 to 2,875,888 _2396 Shewana3_2397: Shewana3_2397 - hypothetical protein (RefSeq), at 2,876,175 to 2,876,732 _2397 Shewana3_2398: Shewana3_2398 - hypothetical protein (RefSeq), at 2,876,817 to 2,877,422 _2398 Position (kb) 2875 2876Strain fitness (log2 ratio) -2 -1 0 1 2at 2875.417 kb on - strandat 2875.495 kb on - strand, within Shewana3_2396at 2875.544 kb on - strand, within Shewana3_2396at 2875.634 kb on + strand, within Shewana3_2396at 2875.677 kb on - strand, within Shewana3_2396at 2875.940 kb on - strandat 2876.081 kb on + strandat 2876.286 kb on + strand, within Shewana3_2397at 2876.546 kb on + strand, within Shewana3_2397at 2876.705 kb on + strandat 2876.778 kb on - strandat 2876.808 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.064 mg/ml
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2,875,417 - -1.9
2,875,495 - Shewana3_2396 0.11 -0.6
2,875,544 - Shewana3_2396 0.22 +0.5
2,875,634 + Shewana3_2396 0.42 +1.1
2,875,677 - Shewana3_2396 0.52 -0.5
2,875,940 - -0.7
2,876,081 + +1.8
2,876,286 + Shewana3_2397 0.20 +1.1
2,876,546 + Shewana3_2397 0.66 -2.3
2,876,705 + -0.1
2,876,778 - +0.1
2,876,808 - -0.7

Or see this region's nucleotide sequence