Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2390

Experiment: Thallium(I) acetate 0.064 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2388 and Shewana3_2389 are separated by 130 nucleotidesShewana3_2389 and Shewana3_2390 overlap by 8 nucleotidesShewana3_2390 and Shewana3_2391 are separated by 142 nucleotides Shewana3_2388: Shewana3_2388 - hypothetical protein (RefSeq), at 2,867,673 to 2,868,485 _2388 Shewana3_2389: Shewana3_2389 - hypothetical protein (RefSeq), at 2,868,616 to 2,869,323 _2389 Shewana3_2390: Shewana3_2390 - hypothetical protein (RefSeq), at 2,869,316 to 2,869,624 _2390 Shewana3_2391: Shewana3_2391 - peptidase M22, glycoprotease (RefSeq), at 2,869,767 to 2,870,477 _2391 Position (kb) 2869 2870Strain fitness (log2 ratio) -2 -1 0 1 2at 2868.400 kb on + strand, within Shewana3_2388at 2868.426 kb on + strandat 2868.434 kb on - strandat 2868.434 kb on - strandat 2868.434 kb on - strandat 2868.804 kb on + strand, within Shewana3_2389at 2868.872 kb on + strand, within Shewana3_2389at 2868.919 kb on + strand, within Shewana3_2389at 2868.927 kb on - strand, within Shewana3_2389at 2869.063 kb on + strand, within Shewana3_2389at 2869.149 kb on + strand, within Shewana3_2389at 2869.400 kb on + strand, within Shewana3_2390at 2869.472 kb on + strand, within Shewana3_2390at 2869.653 kb on - strandat 2870.536 kb on - strandat 2870.541 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.064 mg/ml
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2,868,400 + Shewana3_2388 0.89 +2.1
2,868,426 + +2.1
2,868,434 - +1.7
2,868,434 - +0.1
2,868,434 - -0.7
2,868,804 + Shewana3_2389 0.27 -1.9
2,868,872 + Shewana3_2389 0.36 +0.1
2,868,919 + Shewana3_2389 0.43 -1.8
2,868,927 - Shewana3_2389 0.44 -0.7
2,869,063 + Shewana3_2389 0.63 +1.1
2,869,149 + Shewana3_2389 0.75 +0.9
2,869,400 + Shewana3_2390 0.27 -0.4
2,869,472 + Shewana3_2390 0.50 -1.0
2,869,653 - -1.2
2,870,536 - +0.5
2,870,541 - -0.0

Or see this region's nucleotide sequence