Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2372

Experiment: Thallium(I) acetate 0.064 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2370 and Shewana3_2371 are separated by 263 nucleotidesShewana3_2371 and Shewana3_2372 are separated by 2 nucleotidesShewana3_2372 and Shewana3_2373 are separated by 42 nucleotidesShewana3_2373 and Shewana3_2374 are separated by 219 nucleotides Shewana3_2370: Shewana3_2370 - MltD domain-containing protein (RefSeq), at 2,848,212 to 2,849,759 _2370 Shewana3_2371: Shewana3_2371 - intracellular proteinase inhibitor domain-containing protein (RefSeq), at 2,850,023 to 2,850,682 _2371 Shewana3_2372: Shewana3_2372 - AsmA protein (RefSeq), at 2,850,685 to 2,852,505 _2372 Shewana3_2373: Shewana3_2373 - ribonuclease activity regulator protein RraA (RefSeq), at 2,852,548 to 2,853,042 _2373 Shewana3_2374: Shewana3_2374 - hypothetical protein (RefSeq), at 2,853,262 to 2,853,582 _2374 Position (kb) 2850 2851 2852 2853Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2849.769 kb on - strandat 2849.804 kb on + strandat 2850.048 kb on - strandat 2850.202 kb on + strand, within Shewana3_2371at 2850.385 kb on + strand, within Shewana3_2371at 2850.554 kb on - strand, within Shewana3_2371at 2850.737 kb on - strandat 2850.873 kb on - strand, within Shewana3_2372at 2850.894 kb on - strand, within Shewana3_2372at 2850.948 kb on - strand, within Shewana3_2372at 2851.053 kb on + strand, within Shewana3_2372at 2851.098 kb on - strand, within Shewana3_2372at 2851.438 kb on + strand, within Shewana3_2372at 2851.486 kb on - strand, within Shewana3_2372at 2851.898 kb on + strand, within Shewana3_2372at 2851.921 kb on + strand, within Shewana3_2372at 2852.049 kb on + strand, within Shewana3_2372at 2852.186 kb on - strand, within Shewana3_2372at 2852.267 kb on + strand, within Shewana3_2372at 2852.367 kb on + strandat 2852.376 kb on - strandat 2852.442 kb on + strandat 2852.442 kb on + strandat 2852.468 kb on - strandat 2852.468 kb on - strandat 2852.594 kb on - strandat 2852.594 kb on - strandat 2852.697 kb on + strand, within Shewana3_2373at 2852.719 kb on - strand, within Shewana3_2373at 2852.794 kb on - strand, within Shewana3_2373at 2852.997 kb on + strandat 2853.100 kb on - strandat 2853.208 kb on - strandat 2853.461 kb on + strand, within Shewana3_2374

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.064 mg/ml
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2,849,769 - +1.1
2,849,804 + +0.1
2,850,048 - -0.4
2,850,202 + Shewana3_2371 0.27 -0.3
2,850,385 + Shewana3_2371 0.55 +0.1
2,850,554 - Shewana3_2371 0.80 +0.8
2,850,737 - +0.4
2,850,873 - Shewana3_2372 0.10 +1.1
2,850,894 - Shewana3_2372 0.11 +1.0
2,850,948 - Shewana3_2372 0.14 +1.0
2,851,053 + Shewana3_2372 0.20 -0.2
2,851,098 - Shewana3_2372 0.23 +0.5
2,851,438 + Shewana3_2372 0.41 +2.1
2,851,486 - Shewana3_2372 0.44 +1.0
2,851,898 + Shewana3_2372 0.67 -1.0
2,851,921 + Shewana3_2372 0.68 +0.1
2,852,049 + Shewana3_2372 0.75 +2.1
2,852,186 - Shewana3_2372 0.82 -0.5
2,852,267 + Shewana3_2372 0.87 +2.1
2,852,367 + -3.9
2,852,376 - +0.6
2,852,442 + +2.1
2,852,442 + +2.1
2,852,468 - -0.4
2,852,468 - +0.6
2,852,594 - +0.5
2,852,594 - -0.0
2,852,697 + Shewana3_2373 0.30 -1.0
2,852,719 - Shewana3_2373 0.35 +0.5
2,852,794 - Shewana3_2373 0.50 +0.2
2,852,997 + +0.1
2,853,100 - +0.6
2,853,208 - +0.8
2,853,461 + Shewana3_2374 0.62 -1.3

Or see this region's nucleotide sequence