Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2299

Experiment: Thallium(I) acetate 0.064 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2297 and Shewana3_2298 are separated by 101 nucleotidesShewana3_2298 and Shewana3_2299 are separated by 112 nucleotidesShewana3_2299 and Shewana3_2300 are separated by 55 nucleotidesShewana3_2300 and Shewana3_2301 are separated by 137 nucleotides Shewana3_2297: Shewana3_2297 - ISPsy11, transposase OrfA (RefSeq), at 2,761,088 to 2,761,480 _2297 Shewana3_2298: Shewana3_2298 - integrase catalytic subunit (RefSeq), at 2,761,582 to 2,762,304 _2298 Shewana3_2299: Shewana3_2299 - hypothetical protein (RefSeq), at 2,762,417 to 2,763,352 _2299 Shewana3_2300: Shewana3_2300 - GCN5-related N-acetyltransferase (RefSeq), at 2,763,408 to 2,763,866 _2300 Shewana3_2301: Shewana3_2301 - peptidase S9 prolyl oligopeptidase (RefSeq), at 2,764,004 to 2,766,067 _2301 Position (kb) 2762 2763 2764Strain fitness (log2 ratio) -2 -1 0 1at 2762.440 kb on + strandat 2762.553 kb on - strand, within Shewana3_2299at 2762.667 kb on - strand, within Shewana3_2299at 2762.782 kb on - strand, within Shewana3_2299at 2762.856 kb on + strand, within Shewana3_2299at 2762.885 kb on + strand, within Shewana3_2299at 2763.599 kb on - strand, within Shewana3_2300at 2763.637 kb on + strand, within Shewana3_2300at 2763.645 kb on - strand, within Shewana3_2300at 2763.705 kb on + strand, within Shewana3_2300at 2763.713 kb on - strand, within Shewana3_2300at 2763.770 kb on + strand, within Shewana3_2300at 2763.773 kb on - strand, within Shewana3_2300at 2763.780 kb on + strand, within Shewana3_2300at 2763.783 kb on - strand, within Shewana3_2300at 2763.807 kb on - strand, within Shewana3_2300

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.064 mg/ml
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2,762,440 + +0.8
2,762,553 - Shewana3_2299 0.15 -0.1
2,762,667 - Shewana3_2299 0.27 -1.0
2,762,782 - Shewana3_2299 0.39 -0.2
2,762,856 + Shewana3_2299 0.47 +1.2
2,762,885 + Shewana3_2299 0.50 +0.6
2,763,599 - Shewana3_2300 0.42 -0.6
2,763,637 + Shewana3_2300 0.50 -2.4
2,763,645 - Shewana3_2300 0.52 -0.5
2,763,705 + Shewana3_2300 0.65 +0.1
2,763,713 - Shewana3_2300 0.66 +0.5
2,763,770 + Shewana3_2300 0.79 -1.7
2,763,773 - Shewana3_2300 0.80 -0.2
2,763,780 + Shewana3_2300 0.81 +1.4
2,763,783 - Shewana3_2300 0.82 +0.0
2,763,807 - Shewana3_2300 0.87 -0.7

Or see this region's nucleotide sequence