Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2267

Experiment: Thallium(I) acetate 0.064 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_2266 and Shewana3_2267 are separated by 132 nucleotidesShewana3_2267 and Shewana3_2268 are separated by 481 nucleotides Shewana3_2266: Shewana3_2266 - GntR family transcriptional regulator (RefSeq), at 2,727,488 to 2,728,870 _2266 Shewana3_2267: Shewana3_2267 - alkaline phosphatase (RefSeq), at 2,729,003 to 2,730,877 _2267 Shewana3_2268: Shewana3_2268 - Bcr/CflA subfamily drug resistance transporter (RefSeq), at 2,731,359 to 2,732,582 _2268 Position (kb) 2729 2730 2731Strain fitness (log2 ratio) -2 -1 0 1 2at 2728.241 kb on + strand, within Shewana3_2266at 2728.398 kb on + strand, within Shewana3_2266at 2728.524 kb on + strand, within Shewana3_2266at 2728.625 kb on + strand, within Shewana3_2266at 2728.655 kb on + strand, within Shewana3_2266at 2728.715 kb on + strand, within Shewana3_2266at 2728.830 kb on + strandat 2729.019 kb on - strandat 2729.094 kb on - strandat 2729.438 kb on + strand, within Shewana3_2267at 2729.540 kb on - strand, within Shewana3_2267at 2729.605 kb on + strand, within Shewana3_2267at 2729.822 kb on - strand, within Shewana3_2267at 2729.936 kb on + strand, within Shewana3_2267at 2730.026 kb on - strand, within Shewana3_2267at 2730.026 kb on - strand, within Shewana3_2267at 2730.206 kb on + strand, within Shewana3_2267at 2730.214 kb on - strand, within Shewana3_2267at 2730.592 kb on + strand, within Shewana3_2267at 2730.593 kb on - strand, within Shewana3_2267at 2730.597 kb on + strand, within Shewana3_2267at 2730.605 kb on - strand, within Shewana3_2267at 2730.612 kb on + strand, within Shewana3_2267at 2730.733 kb on - strandat 2731.020 kb on - strandat 2731.664 kb on + strand, within Shewana3_2268at 2731.667 kb on - strand, within Shewana3_2268at 2731.787 kb on + strand, within Shewana3_2268

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.064 mg/ml
remove
2,728,241 + Shewana3_2266 0.54 +1.6
2,728,398 + Shewana3_2266 0.66 +1.9
2,728,524 + Shewana3_2266 0.75 +0.2
2,728,625 + Shewana3_2266 0.82 +2.0
2,728,655 + Shewana3_2266 0.84 +1.7
2,728,715 + Shewana3_2266 0.89 +1.5
2,728,830 + +1.7
2,729,019 - +0.6
2,729,094 - +1.6
2,729,438 + Shewana3_2267 0.23 +1.7
2,729,540 - Shewana3_2267 0.29 -0.3
2,729,605 + Shewana3_2267 0.32 -0.1
2,729,822 - Shewana3_2267 0.44 +0.2
2,729,936 + Shewana3_2267 0.50 -0.8
2,730,026 - Shewana3_2267 0.55 -2.5
2,730,026 - Shewana3_2267 0.55 -1.3
2,730,206 + Shewana3_2267 0.64 -0.0
2,730,214 - Shewana3_2267 0.65 -0.2
2,730,592 + Shewana3_2267 0.85 -1.2
2,730,593 - Shewana3_2267 0.85 +1.1
2,730,597 + Shewana3_2267 0.85 -0.3
2,730,605 - Shewana3_2267 0.85 +0.3
2,730,612 + Shewana3_2267 0.86 -0.9
2,730,733 - -1.7
2,731,020 - +0.2
2,731,664 + Shewana3_2268 0.25 +0.0
2,731,667 - Shewana3_2268 0.25 -0.1
2,731,787 + Shewana3_2268 0.35 -0.1

Or see this region's nucleotide sequence