Experiment: Thallium(I) acetate 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2235 and Shewana3_2236 are separated by 93 nucleotides Shewana3_2236 and Shewana3_2237 are separated by 214 nucleotides
Shewana3_2235: Shewana3_2235 - hypothetical protein (RefSeq), at 2,687,277 to 2,688,842
_2235
Shewana3_2236: Shewana3_2236 - lytic transglycosylase, catalytic (RefSeq), at 2,688,936 to 2,690,861
_2236
Shewana3_2237: Shewana3_2237 - diguanylate phosphodiesterase (RefSeq), at 2,691,076 to 2,691,777
_2237
Position (kb)
2688
2689
2690
2691 Strain fitness (log2 ratio)
-1
0
1
2 at 2687.968 kb on + strand, within Shewana3_2235 at 2687.968 kb on + strand, within Shewana3_2235 at 2687.968 kb on + strand, within Shewana3_2235 at 2687.976 kb on - strand, within Shewana3_2235 at 2688.429 kb on - strand, within Shewana3_2235 at 2688.429 kb on - strand, within Shewana3_2235 at 2688.439 kb on - strand, within Shewana3_2235 at 2688.515 kb on - strand, within Shewana3_2235 at 2688.775 kb on - strand at 2688.801 kb on + strand at 2688.881 kb on - strand at 2688.881 kb on - strand at 2688.960 kb on + strand at 2688.973 kb on - strand at 2689.195 kb on - strand, within Shewana3_2236 at 2689.325 kb on + strand, within Shewana3_2236 at 2690.541 kb on + strand, within Shewana3_2236 at 2690.567 kb on - strand, within Shewana3_2236 at 2690.567 kb on - strand, within Shewana3_2236 at 2690.572 kb on - strand, within Shewana3_2236 at 2690.657 kb on + strand, within Shewana3_2236 at 2691.186 kb on + strand, within Shewana3_2237 at 2691.187 kb on + strand, within Shewana3_2237 at 2691.593 kb on + strand, within Shewana3_2237 at 2691.766 kb on - strand at 2691.836 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.064 mg/ml remove 2,687,968 + Shewana3_2235 0.44 -0.8 2,687,968 + Shewana3_2235 0.44 +0.7 2,687,968 + Shewana3_2235 0.44 -0.2 2,687,976 - Shewana3_2235 0.45 -0.0 2,688,429 - Shewana3_2235 0.74 +1.3 2,688,429 - Shewana3_2235 0.74 -0.0 2,688,439 - Shewana3_2235 0.74 +1.3 2,688,515 - Shewana3_2235 0.79 +1.3 2,688,775 - +0.7 2,688,801 + -0.1 2,688,881 - +0.7 2,688,881 - +0.7 2,688,960 + +1.6 2,688,973 - +0.7 2,689,195 - Shewana3_2236 0.13 +1.9 2,689,325 + Shewana3_2236 0.20 +0.5 2,690,541 + Shewana3_2236 0.83 +0.2 2,690,567 - Shewana3_2236 0.85 -1.3 2,690,567 - Shewana3_2236 0.85 +1.7 2,690,572 - Shewana3_2236 0.85 -0.7 2,690,657 + Shewana3_2236 0.89 +1.2 2,691,186 + Shewana3_2237 0.16 -0.1 2,691,187 + Shewana3_2237 0.16 +1.2 2,691,593 + Shewana3_2237 0.74 +1.3 2,691,766 - +0.7 2,691,836 + +1.3
Or see this region's nucleotide sequence