Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2223

Experiment: Thallium(I) acetate 0.064 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2222 and Shewana3_2223 are separated by 274 nucleotidesShewana3_2223 and Shewana3_2224 are separated by 123 nucleotides Shewana3_2222: Shewana3_2222 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 2,669,269 to 2,670,405 _2222 Shewana3_2223: Shewana3_2223 - CoA-binding domain-containing protein (RefSeq), at 2,670,680 to 2,673,394 _2223 Shewana3_2224: Shewana3_2224 - EmrB/QacA family drug resistance transporter (RefSeq), at 2,673,518 to 2,675,098 _2224 Position (kb) 2670 2671 2672 2673 2674Strain fitness (log2 ratio) -2 -1 0 1 2at 2669.890 kb on - strand, within Shewana3_2222at 2669.946 kb on - strand, within Shewana3_2222at 2670.215 kb on - strand, within Shewana3_2222at 2670.244 kb on + strand, within Shewana3_2222at 2671.193 kb on + strand, within Shewana3_2223at 2671.267 kb on - strand, within Shewana3_2223at 2671.638 kb on + strand, within Shewana3_2223at 2671.661 kb on - strand, within Shewana3_2223at 2671.711 kb on - strand, within Shewana3_2223at 2671.724 kb on + strand, within Shewana3_2223at 2672.022 kb on - strand, within Shewana3_2223at 2672.149 kb on + strand, within Shewana3_2223at 2672.151 kb on - strand, within Shewana3_2223at 2672.204 kb on - strand, within Shewana3_2223at 2672.337 kb on + strand, within Shewana3_2223at 2672.402 kb on - strand, within Shewana3_2223at 2672.751 kb on - strand, within Shewana3_2223at 2673.102 kb on + strand, within Shewana3_2223at 2673.183 kb on + strandat 2673.183 kb on + strandat 2673.243 kb on + strandat 2673.251 kb on - strandat 2673.291 kb on + strandat 2673.516 kb on + strandat 2673.543 kb on + strandat 2673.551 kb on - strandat 2673.650 kb on + strandat 2673.650 kb on + strandat 2673.657 kb on + strandat 2673.658 kb on - strandat 2673.662 kb on + strandat 2673.663 kb on - strandat 2673.780 kb on - strand, within Shewana3_2224at 2673.780 kb on - strand, within Shewana3_2224at 2673.799 kb on + strand, within Shewana3_2224at 2673.799 kb on + strand, within Shewana3_2224at 2673.799 kb on + strand, within Shewana3_2224at 2673.807 kb on - strand, within Shewana3_2224at 2673.889 kb on - strand, within Shewana3_2224at 2673.913 kb on - strand, within Shewana3_2224at 2674.123 kb on - strand, within Shewana3_2224at 2674.139 kb on - strand, within Shewana3_2224

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.064 mg/ml
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2,669,890 - Shewana3_2222 0.55 -0.7
2,669,946 - Shewana3_2222 0.60 +1.3
2,670,215 - Shewana3_2222 0.83 +1.3
2,670,244 + Shewana3_2222 0.86 +1.3
2,671,193 + Shewana3_2223 0.19 -1.2
2,671,267 - Shewana3_2223 0.22 -0.7
2,671,638 + Shewana3_2223 0.35 +0.3
2,671,661 - Shewana3_2223 0.36 +0.3
2,671,711 - Shewana3_2223 0.38 -0.0
2,671,724 + Shewana3_2223 0.38 -0.3
2,672,022 - Shewana3_2223 0.49 -0.9
2,672,149 + Shewana3_2223 0.54 -0.0
2,672,151 - Shewana3_2223 0.54 +0.6
2,672,204 - Shewana3_2223 0.56 -0.3
2,672,337 + Shewana3_2223 0.61 -0.6
2,672,402 - Shewana3_2223 0.63 +0.7
2,672,751 - Shewana3_2223 0.76 -1.6
2,673,102 + Shewana3_2223 0.89 -0.7
2,673,183 + +0.7
2,673,183 + -1.4
2,673,243 + -1.2
2,673,251 - -0.3
2,673,291 + +0.1
2,673,516 + -1.4
2,673,543 + -0.7
2,673,551 - -0.5
2,673,650 + -1.8
2,673,650 + -1.6
2,673,657 + -0.0
2,673,658 - +0.4
2,673,662 + -0.3
2,673,663 - -0.1
2,673,780 - Shewana3_2224 0.17 +0.9
2,673,780 - Shewana3_2224 0.17 +1.8
2,673,799 + Shewana3_2224 0.18 +0.3
2,673,799 + Shewana3_2224 0.18 -0.3
2,673,799 + Shewana3_2224 0.18 -0.5
2,673,807 - Shewana3_2224 0.18 +0.3
2,673,889 - Shewana3_2224 0.23 -1.8
2,673,913 - Shewana3_2224 0.25 -0.2
2,674,123 - Shewana3_2224 0.38 -0.3
2,674,139 - Shewana3_2224 0.39 +0.4

Or see this region's nucleotide sequence