Experiment: Thallium(I) acetate 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2198 and Shewana3_2199 are separated by 10 nucleotides Shewana3_2199 and Shewana3_2200 are separated by 91 nucleotides Shewana3_2200 and Shewana3_2201 are separated by 287 nucleotides
Shewana3_2198: Shewana3_2198 - hypothetical protein (RefSeq), at 2,638,294 to 2,639,196
_2198
Shewana3_2199: Shewana3_2199 - hypothetical protein (RefSeq), at 2,639,207 to 2,639,989
_2199
Shewana3_2200: Shewana3_2200 - response regulator receiver protein (RefSeq), at 2,640,081 to 2,642,006
_2200
Shewana3_2201: Shewana3_2201 - response regulator receiver modulated diguanylate phosphodiesterase (RefSeq), at 2,642,294 to 2,643,496
_2201
Position (kb)
2640
2641
2642
2643 Strain fitness (log2 ratio)
-1
0
1
2
3
4 at 2639.169 kb on + strand at 2639.300 kb on - strand, within Shewana3_2199 at 2639.319 kb on + strand, within Shewana3_2199 at 2639.430 kb on + strand, within Shewana3_2199 at 2639.640 kb on - strand, within Shewana3_2199 at 2639.766 kb on - strand, within Shewana3_2199 at 2640.164 kb on + strand at 2640.207 kb on - strand at 2640.260 kb on - strand at 2640.487 kb on - strand, within Shewana3_2200 at 2640.495 kb on + strand, within Shewana3_2200 at 2640.754 kb on + strand, within Shewana3_2200 at 2640.821 kb on + strand, within Shewana3_2200 at 2640.836 kb on + strand, within Shewana3_2200 at 2640.880 kb on - strand, within Shewana3_2200 at 2640.945 kb on + strand, within Shewana3_2200 at 2640.965 kb on + strand, within Shewana3_2200 at 2640.987 kb on - strand, within Shewana3_2200 at 2641.065 kb on - strand, within Shewana3_2200 at 2641.179 kb on - strand, within Shewana3_2200 at 2641.184 kb on + strand, within Shewana3_2200 at 2641.389 kb on + strand, within Shewana3_2200 at 2641.645 kb on + strand, within Shewana3_2200 at 2641.655 kb on + strand, within Shewana3_2200 at 2641.688 kb on + strand, within Shewana3_2200 at 2641.929 kb on - strand at 2642.032 kb on - strand at 2642.067 kb on + strand at 2642.075 kb on - strand at 2642.181 kb on + strand at 2642.199 kb on - strand at 2642.215 kb on + strand at 2642.404 kb on - strand at 2642.404 kb on - strand at 2642.404 kb on - strand at 2642.404 kb on - strand at 2642.664 kb on + strand, within Shewana3_2201 at 2642.694 kb on - strand, within Shewana3_2201 at 2642.830 kb on - strand, within Shewana3_2201 at 2642.919 kb on + strand, within Shewana3_2201 at 2642.970 kb on - strand, within Shewana3_2201
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.064 mg/ml remove 2,639,169 + -1.4 2,639,300 - Shewana3_2199 0.12 +1.3 2,639,319 + Shewana3_2199 0.14 +0.2 2,639,430 + Shewana3_2199 0.28 +2.3 2,639,640 - Shewana3_2199 0.55 +0.5 2,639,766 - Shewana3_2199 0.71 +0.0 2,640,164 + +4.3 2,640,207 - -1.1 2,640,260 - +0.0 2,640,487 - Shewana3_2200 0.21 +0.3 2,640,495 + Shewana3_2200 0.21 +0.3 2,640,754 + Shewana3_2200 0.35 -0.7 2,640,821 + Shewana3_2200 0.38 -0.2 2,640,836 + Shewana3_2200 0.39 +0.8 2,640,880 - Shewana3_2200 0.41 -1.0 2,640,945 + Shewana3_2200 0.45 -0.2 2,640,965 + Shewana3_2200 0.46 -0.7 2,640,987 - Shewana3_2200 0.47 +1.3 2,641,065 - Shewana3_2200 0.51 +0.0 2,641,179 - Shewana3_2200 0.57 -1.0 2,641,184 + Shewana3_2200 0.57 +2.3 2,641,389 + Shewana3_2200 0.68 -0.2 2,641,645 + Shewana3_2200 0.81 +2.3 2,641,655 + Shewana3_2200 0.82 -1.0 2,641,688 + Shewana3_2200 0.83 +0.8 2,641,929 - -0.7 2,642,032 - -1.2 2,642,067 + -0.9 2,642,075 - +0.3 2,642,181 + +0.3 2,642,199 - +0.0 2,642,215 + +1.3 2,642,404 - +0.3 2,642,404 - -0.2 2,642,404 - +2.1 2,642,404 - -0.8 2,642,664 + Shewana3_2201 0.31 +1.3 2,642,694 - Shewana3_2201 0.33 -0.2 2,642,830 - Shewana3_2201 0.45 -0.5 2,642,919 + Shewana3_2201 0.52 +0.6 2,642,970 - Shewana3_2201 0.56 +0.0
Or see this region's nucleotide sequence