Experiment: Thallium(I) acetate 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2163 and Shewana3_2164 are separated by 188 nucleotides Shewana3_2164 and Shewana3_2165 overlap by 4 nucleotides Shewana3_2165 and Shewana3_2166 are separated by 139 nucleotides
Shewana3_2163: Shewana3_2163 - radical activating enzyme (RefSeq), at 2,592,129 to 2,592,797
_2163
Shewana3_2164: Shewana3_2164 - queuosine biosynthesis protein QueC (RefSeq), at 2,592,986 to 2,593,705
_2164
Shewana3_2165: Shewana3_2165 - rhomboid family protein (RefSeq), at 2,593,702 to 2,594,307
_2165
Shewana3_2166: Shewana3_2166 - excinuclease ABC subunit B (RefSeq), at 2,594,447 to 2,596,468
_2166
Position (kb)
2592
2593
2594 Strain fitness (log2 ratio)
-1
0
1
2 at 2592.094 kb on + strand at 2592.367 kb on - strand, within Shewana3_2163 at 2592.513 kb on - strand, within Shewana3_2163 at 2592.556 kb on + strand, within Shewana3_2163 at 2592.627 kb on + strand, within Shewana3_2163 at 2592.920 kb on - strand at 2593.225 kb on - strand, within Shewana3_2164 at 2593.278 kb on + strand, within Shewana3_2164 at 2593.329 kb on - strand, within Shewana3_2164 at 2593.550 kb on + strand, within Shewana3_2164 at 2593.550 kb on + strand, within Shewana3_2164 at 2593.550 kb on + strand, within Shewana3_2164 at 2593.558 kb on - strand, within Shewana3_2164 at 2593.694 kb on + strand at 2593.773 kb on + strand, within Shewana3_2165 at 2593.812 kb on + strand, within Shewana3_2165 at 2593.858 kb on + strand, within Shewana3_2165 at 2594.014 kb on - strand, within Shewana3_2165 at 2594.045 kb on + strand, within Shewana3_2165 at 2594.177 kb on - strand at 2594.378 kb on + strand at 2594.497 kb on - strand at 2594.573 kb on - strand at 2594.637 kb on + strand at 2594.699 kb on - strand, within Shewana3_2166
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.064 mg/ml remove 2,592,094 + +1.3 2,592,367 - Shewana3_2163 0.36 +0.4 2,592,513 - Shewana3_2163 0.57 -0.3 2,592,556 + Shewana3_2163 0.64 +1.3 2,592,627 + Shewana3_2163 0.74 +0.7 2,592,920 - -1.0 2,593,225 - Shewana3_2164 0.33 +0.7 2,593,278 + Shewana3_2164 0.41 -1.0 2,593,329 - Shewana3_2164 0.48 +1.0 2,593,550 + Shewana3_2164 0.78 +0.6 2,593,550 + Shewana3_2164 0.78 +2.7 2,593,550 + Shewana3_2164 0.78 +1.1 2,593,558 - Shewana3_2164 0.79 -0.8 2,593,694 + +0.1 2,593,773 + Shewana3_2165 0.12 +0.0 2,593,812 + Shewana3_2165 0.18 +1.0 2,593,858 + Shewana3_2165 0.26 -1.3 2,594,014 - Shewana3_2165 0.51 +2.3 2,594,045 + Shewana3_2165 0.57 +0.0 2,594,177 - +2.3 2,594,378 + +2.3 2,594,497 - +0.7 2,594,573 - +0.4 2,594,637 + -0.0 2,594,699 - Shewana3_2166 0.12 -0.3
Or see this region's nucleotide sequence