Experiment: Thallium(I) acetate 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2088 and Shewana3_2089 are separated by 522 nucleotides Shewana3_2089 and Shewana3_2090 are separated by 2 nucleotides Shewana3_2090 and Shewana3_2091 overlap by 4 nucleotides
Shewana3_2088: Shewana3_2088 - L-arabinolactonase (EC 3.1.1.15) (from data) , at 2,505,356 to 2,506,258
_2088
Shewana3_2089: Shewana3_2089 - formate dehydrogenase alpha subunit (RefSeq), at 2,506,781 to 2,509,798
_2089
Shewana3_2090: Shewana3_2090 - formate dehydrogenase beta subunit (RefSeq), at 2,509,801 to 2,510,703
_2090
Shewana3_2091: Shewana3_2091 - formate dehydrogenase gamma subunit (RefSeq), at 2,510,700 to 2,511,323
_2091
Position (kb)
2506
2507
2508
2509
2510 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2505.826 kb on + strand, within Shewana3_2088 at 2506.046 kb on + strand, within Shewana3_2088 at 2506.304 kb on + strand at 2507.058 kb on + strand at 2507.169 kb on - strand, within Shewana3_2089 at 2507.180 kb on - strand, within Shewana3_2089 at 2507.253 kb on + strand, within Shewana3_2089 at 2507.253 kb on + strand, within Shewana3_2089 at 2507.367 kb on + strand, within Shewana3_2089 at 2507.367 kb on + strand, within Shewana3_2089 at 2507.375 kb on - strand, within Shewana3_2089 at 2507.419 kb on + strand, within Shewana3_2089 at 2507.612 kb on + strand, within Shewana3_2089 at 2507.686 kb on - strand, within Shewana3_2089 at 2507.822 kb on + strand, within Shewana3_2089 at 2507.831 kb on + strand, within Shewana3_2089 at 2507.839 kb on - strand, within Shewana3_2089 at 2507.839 kb on - strand, within Shewana3_2089 at 2507.853 kb on + strand, within Shewana3_2089 at 2508.009 kb on + strand, within Shewana3_2089 at 2508.021 kb on + strand, within Shewana3_2089 at 2508.224 kb on + strand, within Shewana3_2089 at 2508.289 kb on - strand, within Shewana3_2089 at 2508.671 kb on + strand, within Shewana3_2089 at 2508.895 kb on + strand, within Shewana3_2089 at 2509.119 kb on + strand, within Shewana3_2089 at 2509.142 kb on - strand, within Shewana3_2089 at 2509.166 kb on - strand, within Shewana3_2089 at 2509.297 kb on + strand, within Shewana3_2089 at 2509.329 kb on + strand, within Shewana3_2089 at 2509.563 kb on + strand at 2509.599 kb on - strand at 2509.722 kb on - strand at 2510.103 kb on - strand, within Shewana3_2090 at 2510.108 kb on - strand, within Shewana3_2090 at 2510.128 kb on - strand, within Shewana3_2090 at 2510.132 kb on + strand, within Shewana3_2090 at 2510.426 kb on + strand, within Shewana3_2090 at 2510.569 kb on + strand, within Shewana3_2090
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.064 mg/ml remove 2,505,826 + Shewana3_2088 0.52 +1.5 2,506,046 + Shewana3_2088 0.76 +0.3 2,506,304 + -0.7 2,507,058 + -0.7 2,507,169 - Shewana3_2089 0.13 +1.9 2,507,180 - Shewana3_2089 0.13 -1.0 2,507,253 + Shewana3_2089 0.16 +0.8 2,507,253 + Shewana3_2089 0.16 -0.6 2,507,367 + Shewana3_2089 0.19 +1.3 2,507,367 + Shewana3_2089 0.19 +0.9 2,507,375 - Shewana3_2089 0.20 +1.8 2,507,419 + Shewana3_2089 0.21 -0.5 2,507,612 + Shewana3_2089 0.28 -2.4 2,507,686 - Shewana3_2089 0.30 +1.9 2,507,822 + Shewana3_2089 0.34 +0.8 2,507,831 + Shewana3_2089 0.35 -1.1 2,507,839 - Shewana3_2089 0.35 +0.5 2,507,839 - Shewana3_2089 0.35 -1.1 2,507,853 + Shewana3_2089 0.36 -0.7 2,508,009 + Shewana3_2089 0.41 -0.8 2,508,021 + Shewana3_2089 0.41 +0.8 2,508,224 + Shewana3_2089 0.48 -0.5 2,508,289 - Shewana3_2089 0.50 -1.5 2,508,671 + Shewana3_2089 0.63 -0.5 2,508,895 + Shewana3_2089 0.70 -0.2 2,509,119 + Shewana3_2089 0.77 -1.6 2,509,142 - Shewana3_2089 0.78 +1.8 2,509,166 - Shewana3_2089 0.79 +2.3 2,509,297 + Shewana3_2089 0.83 +0.0 2,509,329 + Shewana3_2089 0.84 +0.8 2,509,563 + +1.3 2,509,599 - +1.1 2,509,722 - +0.0 2,510,103 - Shewana3_2090 0.33 +2.3 2,510,108 - Shewana3_2090 0.34 +2.3 2,510,128 - Shewana3_2090 0.36 +0.0 2,510,132 + Shewana3_2090 0.37 +2.3 2,510,426 + Shewana3_2090 0.69 +0.4 2,510,569 + Shewana3_2090 0.85 +0.3
Or see this region's nucleotide sequence