Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1990

Experiment: Thallium(I) acetate 0.064 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntemrD and ampC are separated by 373 nucleotidesampC and Shewana3_1991 are separated by 410 nucleotides Shewana3_1989: emrD - multidrug resistance protein D (RefSeq), at 2,367,658 to 2,368,902 emrD Shewana3_1990: ampC - beta-lactamase (RefSeq), at 2,369,276 to 2,370,493 ampC Shewana3_1991: Shewana3_1991 - DTW domain-containing protein (RefSeq), at 2,370,904 to 2,371,668 _1991 Position (kb) 2369 2370 2371Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2368.825 kb on + strandat 2369.054 kb on - strandat 2369.360 kb on + strandat 2369.429 kb on + strand, within ampCat 2369.430 kb on + strand, within ampCat 2369.547 kb on + strand, within ampCat 2369.791 kb on + strand, within ampCat 2369.831 kb on - strand, within ampCat 2369.854 kb on - strand, within ampCat 2369.893 kb on + strand, within ampCat 2369.986 kb on + strand, within ampCat 2370.024 kb on + strand, within ampCat 2370.078 kb on - strand, within ampCat 2370.150 kb on - strand, within ampCat 2370.210 kb on - strand, within ampCat 2370.402 kb on + strandat 2370.945 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.064 mg/ml
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2,368,825 + +2.3
2,369,054 - +0.4
2,369,360 + -0.5
2,369,429 + ampC Shewana3_1990 0.13 +0.4
2,369,430 + ampC Shewana3_1990 0.13 +1.0
2,369,547 + ampC Shewana3_1990 0.22 +0.7
2,369,791 + ampC Shewana3_1990 0.42 -1.3
2,369,831 - ampC Shewana3_1990 0.46 +3.6
2,369,854 - ampC Shewana3_1990 0.47 +1.1
2,369,893 + ampC Shewana3_1990 0.51 -1.7
2,369,986 + ampC Shewana3_1990 0.58 -0.4
2,370,024 + ampC Shewana3_1990 0.61 +0.1
2,370,078 - ampC Shewana3_1990 0.66 +1.6
2,370,150 - ampC Shewana3_1990 0.72 +0.9
2,370,210 - ampC Shewana3_1990 0.77 +0.7
2,370,402 + -0.5
2,370,945 + -2.0

Or see this region's nucleotide sequence