Experiment: Thallium(I) acetate 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1958 and Shewana3_1959 are separated by 197 nucleotides Shewana3_1959 and Shewana3_1960 are separated by 180 nucleotides
Shewana3_1958: Shewana3_1958 - TonB-dependent receptor (RefSeq), at 2,330,327 to 2,332,888
_1958
Shewana3_1959: Shewana3_1959 - two component transcriptional regulator (RefSeq), at 2,333,086 to 2,333,766
_1959
Shewana3_1960: Shewana3_1960 - peptidase M14, carboxypeptidase A (RefSeq), at 2,333,947 to 2,335,074
_1960
Position (kb)
2333
2334 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2332.185 kb on - strand, within Shewana3_1958 at 2332.301 kb on - strand, within Shewana3_1958 at 2332.438 kb on - strand, within Shewana3_1958 at 2332.547 kb on + strand, within Shewana3_1958 at 2332.758 kb on + strand at 2332.835 kb on + strand at 2333.000 kb on - strand at 2333.194 kb on - strand, within Shewana3_1959 at 2333.213 kb on + strand, within Shewana3_1959 at 2333.291 kb on + strand, within Shewana3_1959 at 2333.432 kb on + strand, within Shewana3_1959 at 2333.432 kb on + strand, within Shewana3_1959 at 2333.705 kb on + strand at 2333.901 kb on + strand at 2334.136 kb on + strand, within Shewana3_1960 at 2334.183 kb on + strand, within Shewana3_1960 at 2334.238 kb on + strand, within Shewana3_1960 at 2334.277 kb on - strand, within Shewana3_1960 at 2334.285 kb on - strand, within Shewana3_1960 at 2334.357 kb on + strand, within Shewana3_1960 at 2334.632 kb on + strand, within Shewana3_1960
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.064 mg/ml remove 2,332,185 - Shewana3_1958 0.73 +0.3 2,332,301 - Shewana3_1958 0.77 -0.3 2,332,438 - Shewana3_1958 0.82 +0.3 2,332,547 + Shewana3_1958 0.87 +1.2 2,332,758 + +0.5 2,332,835 + +1.6 2,333,000 - +0.3 2,333,194 - Shewana3_1959 0.16 +1.3 2,333,213 + Shewana3_1959 0.19 -2.2 2,333,291 + Shewana3_1959 0.30 +1.3 2,333,432 + Shewana3_1959 0.51 -0.7 2,333,432 + Shewana3_1959 0.51 -0.7 2,333,705 + -1.2 2,333,901 + +0.3 2,334,136 + Shewana3_1960 0.17 +1.4 2,334,183 + Shewana3_1960 0.21 -0.1 2,334,238 + Shewana3_1960 0.26 +2.6 2,334,277 - Shewana3_1960 0.29 +2.3 2,334,285 - Shewana3_1960 0.30 +2.3 2,334,357 + Shewana3_1960 0.36 +0.3 2,334,632 + Shewana3_1960 0.61 -1.3
Or see this region's nucleotide sequence