Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1959

Experiment: Thallium(I) acetate 0.064 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1958 and Shewana3_1959 are separated by 197 nucleotidesShewana3_1959 and Shewana3_1960 are separated by 180 nucleotides Shewana3_1958: Shewana3_1958 - TonB-dependent receptor (RefSeq), at 2,330,327 to 2,332,888 _1958 Shewana3_1959: Shewana3_1959 - two component transcriptional regulator (RefSeq), at 2,333,086 to 2,333,766 _1959 Shewana3_1960: Shewana3_1960 - peptidase M14, carboxypeptidase A (RefSeq), at 2,333,947 to 2,335,074 _1960 Position (kb) 2333 2334Strain fitness (log2 ratio) -2 -1 0 1 2at 2332.185 kb on - strand, within Shewana3_1958at 2332.301 kb on - strand, within Shewana3_1958at 2332.438 kb on - strand, within Shewana3_1958at 2332.547 kb on + strand, within Shewana3_1958at 2332.758 kb on + strandat 2332.835 kb on + strandat 2333.000 kb on - strandat 2333.194 kb on - strand, within Shewana3_1959at 2333.213 kb on + strand, within Shewana3_1959at 2333.291 kb on + strand, within Shewana3_1959at 2333.432 kb on + strand, within Shewana3_1959at 2333.432 kb on + strand, within Shewana3_1959at 2333.705 kb on + strandat 2333.901 kb on + strandat 2334.136 kb on + strand, within Shewana3_1960at 2334.183 kb on + strand, within Shewana3_1960at 2334.238 kb on + strand, within Shewana3_1960at 2334.277 kb on - strand, within Shewana3_1960at 2334.285 kb on - strand, within Shewana3_1960at 2334.357 kb on + strand, within Shewana3_1960at 2334.632 kb on + strand, within Shewana3_1960

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.064 mg/ml
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2,332,185 - Shewana3_1958 0.73 +0.3
2,332,301 - Shewana3_1958 0.77 -0.3
2,332,438 - Shewana3_1958 0.82 +0.3
2,332,547 + Shewana3_1958 0.87 +1.2
2,332,758 + +0.5
2,332,835 + +1.6
2,333,000 - +0.3
2,333,194 - Shewana3_1959 0.16 +1.3
2,333,213 + Shewana3_1959 0.19 -2.2
2,333,291 + Shewana3_1959 0.30 +1.3
2,333,432 + Shewana3_1959 0.51 -0.7
2,333,432 + Shewana3_1959 0.51 -0.7
2,333,705 + -1.2
2,333,901 + +0.3
2,334,136 + Shewana3_1960 0.17 +1.4
2,334,183 + Shewana3_1960 0.21 -0.1
2,334,238 + Shewana3_1960 0.26 +2.6
2,334,277 - Shewana3_1960 0.29 +2.3
2,334,285 - Shewana3_1960 0.30 +2.3
2,334,357 + Shewana3_1960 0.36 +0.3
2,334,632 + Shewana3_1960 0.61 -1.3

Or see this region's nucleotide sequence