Experiment: Thallium(I) acetate 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1943 and Shewana3_1944 are separated by 174 nucleotides Shewana3_1944 and Shewana3_1945 are separated by 173 nucleotides
Shewana3_1943: Shewana3_1943 - protein-glutamate O-methyltransferase (RefSeq), at 2,309,162 to 2,311,384
_1943
Shewana3_1944: Shewana3_1944 - LysR family transcriptional regulator (RefSeq), at 2,311,559 to 2,312,461
_1944
Shewana3_1945: Shewana3_1945 - hypothetical protein (RefSeq), at 2,312,635 to 2,313,834
_1945
Position (kb)
2311
2312
2313 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2310.794 kb on - strand, within Shewana3_1943 at 2310.901 kb on + strand, within Shewana3_1943 at 2311.204 kb on + strand at 2311.349 kb on - strand at 2311.412 kb on - strand at 2311.425 kb on + strand at 2311.894 kb on + strand, within Shewana3_1944 at 2312.308 kb on + strand, within Shewana3_1944 at 2312.360 kb on - strand, within Shewana3_1944 at 2312.456 kb on + strand at 2312.464 kb on - strand at 2312.988 kb on - strand, within Shewana3_1945 at 2313.052 kb on - strand, within Shewana3_1945 at 2313.098 kb on + strand, within Shewana3_1945 at 2313.106 kb on - strand, within Shewana3_1945 at 2313.181 kb on - strand, within Shewana3_1945 at 2313.205 kb on - strand, within Shewana3_1945 at 2313.373 kb on + strand, within Shewana3_1945 at 2313.383 kb on - strand, within Shewana3_1945 at 2313.402 kb on - strand, within Shewana3_1945 at 2313.457 kb on + strand, within Shewana3_1945
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.064 mg/ml remove 2,310,794 - Shewana3_1943 0.73 +2.3 2,310,901 + Shewana3_1943 0.78 +0.2 2,311,204 + +2.3 2,311,349 - +0.3 2,311,412 - -1.2 2,311,425 + +0.3 2,311,894 + Shewana3_1944 0.37 -0.7 2,312,308 + Shewana3_1944 0.83 +0.1 2,312,360 - Shewana3_1944 0.89 -0.0 2,312,456 + -0.3 2,312,464 - -3.1 2,312,988 - Shewana3_1945 0.29 -0.6 2,313,052 - Shewana3_1945 0.35 -0.9 2,313,098 + Shewana3_1945 0.39 +1.3 2,313,106 - Shewana3_1945 0.39 -1.2 2,313,181 - Shewana3_1945 0.46 -0.1 2,313,205 - Shewana3_1945 0.47 +0.3 2,313,373 + Shewana3_1945 0.61 -0.3 2,313,383 - Shewana3_1945 0.62 +2.3 2,313,402 - Shewana3_1945 0.64 +0.7 2,313,457 + Shewana3_1945 0.69 +0.3
Or see this region's nucleotide sequence