Experiment: Thallium(I) acetate 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1909 and Shewana3_1910 are separated by 153 nucleotides Shewana3_1910 and Shewana3_1911 are separated by 65 nucleotides Shewana3_1911 and Shewana3_1912 overlap by 7 nucleotides
Shewana3_1909: Shewana3_1909 - carbonic anhydrase (RefSeq), at 2,266,263 to 2,266,868
_1909
Shewana3_1910: Shewana3_1910 - alpha/beta hydrolase fold (RefSeq), at 2,267,022 to 2,267,852
_1910
Shewana3_1911: Shewana3_1911 - peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysins (RefSeq), at 2,267,918 to 2,268,706
_1911
Shewana3_1912: Shewana3_1912 - succinyl-diaminopimelate desuccinylase (RefSeq), at 2,268,700 to 2,269,845
_1912
Position (kb)
2267
2268 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2266.025 kb on - strand at 2266.057 kb on + strand at 2266.060 kb on - strand at 2266.083 kb on - strand at 2266.090 kb on + strand at 2266.586 kb on + strand, within Shewana3_1909 at 2266.641 kb on + strand, within Shewana3_1909 at 2266.999 kb on - strand at 2266.999 kb on - strand at 2267.192 kb on + strand, within Shewana3_1910 at 2267.197 kb on + strand, within Shewana3_1910 at 2267.200 kb on - strand, within Shewana3_1910 at 2267.461 kb on + strand, within Shewana3_1910 at 2267.463 kb on + strand, within Shewana3_1910 at 2267.604 kb on - strand, within Shewana3_1910 at 2267.621 kb on + strand, within Shewana3_1910 at 2267.632 kb on - strand, within Shewana3_1910 at 2267.651 kb on - strand, within Shewana3_1910 at 2267.916 kb on + strand at 2268.000 kb on - strand, within Shewana3_1911 at 2268.049 kb on - strand, within Shewana3_1911 at 2268.202 kb on - strand, within Shewana3_1911 at 2268.287 kb on + strand, within Shewana3_1911 at 2268.295 kb on - strand, within Shewana3_1911 at 2268.368 kb on + strand, within Shewana3_1911 at 2268.368 kb on + strand, within Shewana3_1911 at 2268.460 kb on + strand, within Shewana3_1911 at 2268.490 kb on + strand, within Shewana3_1911 at 2268.625 kb on - strand, within Shewana3_1911 at 2268.628 kb on + strand at 2268.706 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.064 mg/ml remove 2,266,025 - +0.3 2,266,057 + +0.1 2,266,060 - +0.5 2,266,083 - +1.9 2,266,090 + -0.3 2,266,586 + Shewana3_1909 0.53 +1.3 2,266,641 + Shewana3_1909 0.62 -1.1 2,266,999 - +1.1 2,266,999 - +0.8 2,267,192 + Shewana3_1910 0.20 +0.7 2,267,197 + Shewana3_1910 0.21 +0.3 2,267,200 - Shewana3_1910 0.21 -2.0 2,267,461 + Shewana3_1910 0.53 +2.0 2,267,463 + Shewana3_1910 0.53 +1.3 2,267,604 - Shewana3_1910 0.70 -1.7 2,267,621 + Shewana3_1910 0.72 +0.1 2,267,632 - Shewana3_1910 0.73 -0.0 2,267,651 - Shewana3_1910 0.76 +0.5 2,267,916 + +0.2 2,268,000 - Shewana3_1911 0.10 +1.5 2,268,049 - Shewana3_1911 0.17 +0.2 2,268,202 - Shewana3_1911 0.36 +0.2 2,268,287 + Shewana3_1911 0.47 -2.2 2,268,295 - Shewana3_1911 0.48 +1.1 2,268,368 + Shewana3_1911 0.57 -0.5 2,268,368 + Shewana3_1911 0.57 -0.6 2,268,460 + Shewana3_1911 0.69 -1.3 2,268,490 + Shewana3_1911 0.72 +0.4 2,268,625 - Shewana3_1911 0.90 +1.0 2,268,628 + -1.6 2,268,706 - +0.7
Or see this region's nucleotide sequence