Experiment: Thallium(I) acetate 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1900 and Shewana3_1901 are separated by 10 nucleotides Shewana3_1901 and Shewana3_1902 are separated by 8 nucleotides
Shewana3_1900: Shewana3_1900 - nitrate reductase catalytic subunit (RefSeq), at 2,255,470 to 2,257,959
_1900
Shewana3_1901: Shewana3_1901 - periplasmic nitrate reductase subunit NapB (RefSeq), at 2,257,970 to 2,258,455
_1901
Shewana3_1902: Shewana3_1902 - periplasmic nitrate reductase subunit NapC (RefSeq), at 2,258,464 to 2,259,051
_1902
Position (kb)
2257
2258
2259 Strain fitness (log2 ratio)
-1
0
1 at 2257.184 kb on - strand, within Shewana3_1900 at 2257.400 kb on + strand, within Shewana3_1900 at 2257.401 kb on - strand, within Shewana3_1900 at 2257.489 kb on - strand, within Shewana3_1900 at 2257.647 kb on + strand, within Shewana3_1900 at 2257.673 kb on + strand, within Shewana3_1900 at 2257.961 kb on - strand at 2257.961 kb on - strand at 2258.042 kb on + strand, within Shewana3_1901 at 2258.152 kb on - strand, within Shewana3_1901 at 2258.219 kb on - strand, within Shewana3_1901 at 2258.273 kb on + strand, within Shewana3_1901 at 2258.484 kb on + strand at 2258.521 kb on + strand at 2258.685 kb on + strand, within Shewana3_1902 at 2258.693 kb on - strand, within Shewana3_1902 at 2258.730 kb on - strand, within Shewana3_1902 at 2258.773 kb on + strand, within Shewana3_1902 at 2258.944 kb on + strand, within Shewana3_1902 at 2258.944 kb on + strand, within Shewana3_1902 at 2259.037 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.064 mg/ml remove 2,257,184 - Shewana3_1900 0.69 -0.4 2,257,400 + Shewana3_1900 0.78 +1.2 2,257,401 - Shewana3_1900 0.78 -1.4 2,257,489 - Shewana3_1900 0.81 +0.6 2,257,647 + Shewana3_1900 0.87 +0.9 2,257,673 + Shewana3_1900 0.88 +0.4 2,257,961 - +0.4 2,257,961 - +0.9 2,258,042 + Shewana3_1901 0.15 -1.1 2,258,152 - Shewana3_1901 0.37 +0.4 2,258,219 - Shewana3_1901 0.51 +0.1 2,258,273 + Shewana3_1901 0.62 +0.6 2,258,484 + +0.1 2,258,521 + +0.6 2,258,685 + Shewana3_1902 0.38 +0.9 2,258,693 - Shewana3_1902 0.39 +0.9 2,258,730 - Shewana3_1902 0.45 +0.6 2,258,773 + Shewana3_1902 0.53 -0.3 2,258,944 + Shewana3_1902 0.82 +1.4 2,258,944 + Shewana3_1902 0.82 +1.6 2,259,037 + +1.7
Or see this region's nucleotide sequence