Experiment: Thallium(I) acetate 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1790 and Shewana3_R0083 are separated by 203 nucleotides Shewana3_R0083 and Shewana3_1791 are separated by 354 nucleotides Shewana3_1791 and Shewana3_1792 are separated by 51 nucleotides
Shewana3_1790: Shewana3_1790 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 2,116,330 to 2,118,324
_1790
Shewana3_R0083: Shewana3_R0083 - tRNA-Ser (RefSeq), at 2,118,528 to 2,118,615
_R0083
Shewana3_1791: Shewana3_1791 - phage integrase family protein (RefSeq), at 2,118,970 to 2,120,205
_1791
Shewana3_1792: Shewana3_1792 - hypothetical protein (RefSeq), at 2,120,257 to 2,121,144
_1792
Position (kb)
2118
2119
2120
2121 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2118.155 kb on + strand at 2118.155 kb on + strand at 2118.270 kb on + strand at 2118.283 kb on + strand at 2118.712 kb on - strand at 2118.843 kb on + strand at 2118.966 kb on - strand at 2118.966 kb on - strand at 2118.976 kb on - strand at 2119.016 kb on - strand at 2119.032 kb on + strand at 2119.032 kb on + strand at 2119.040 kb on - strand at 2119.068 kb on - strand at 2119.147 kb on + strand, within Shewana3_1791 at 2119.364 kb on + strand, within Shewana3_1791 at 2119.372 kb on + strand, within Shewana3_1791 at 2119.544 kb on - strand, within Shewana3_1791 at 2119.944 kb on - strand, within Shewana3_1791 at 2120.641 kb on + strand, within Shewana3_1792 at 2120.699 kb on + strand, within Shewana3_1792 at 2120.701 kb on - strand, within Shewana3_1792 at 2120.747 kb on + strand, within Shewana3_1792 at 2120.747 kb on + strand, within Shewana3_1792 at 2120.747 kb on + strand, within Shewana3_1792 at 2120.747 kb on + strand, within Shewana3_1792 at 2120.753 kb on + strand, within Shewana3_1792 at 2120.755 kb on - strand, within Shewana3_1792 at 2120.755 kb on - strand, within Shewana3_1792 at 2120.755 kb on - strand, within Shewana3_1792 at 2120.755 kb on - strand, within Shewana3_1792 at 2120.758 kb on + strand, within Shewana3_1792 at 2120.761 kb on - strand, within Shewana3_1792 at 2120.776 kb on - strand, within Shewana3_1792 at 2120.846 kb on + strand, within Shewana3_1792 at 2120.848 kb on + strand, within Shewana3_1792 at 2120.854 kb on - strand, within Shewana3_1792 at 2120.854 kb on - strand, within Shewana3_1792 at 2120.854 kb on - strand, within Shewana3_1792 at 2120.856 kb on - strand, within Shewana3_1792 at 2120.856 kb on - strand, within Shewana3_1792 at 2120.866 kb on - strand, within Shewana3_1792 at 2120.886 kb on + strand, within Shewana3_1792 at 2120.891 kb on + strand, within Shewana3_1792 at 2120.895 kb on - strand, within Shewana3_1792 at 2120.909 kb on + strand, within Shewana3_1792 at 2120.924 kb on - strand, within Shewana3_1792 at 2121.016 kb on + strand, within Shewana3_1792 at 2121.017 kb on - strand, within Shewana3_1792 at 2121.077 kb on - strand at 2121.077 kb on - strand at 2121.077 kb on - strand at 2121.091 kb on + strand at 2121.091 kb on + strand at 2121.091 kb on + strand at 2121.106 kb on - strand at 2121.114 kb on - strand at 2121.114 kb on - strand at 2121.114 kb on - strand at 2121.129 kb on + strand at 2121.130 kb on - strand at 2121.130 kb on - strand at 2121.139 kb on + strand at 2121.147 kb on - strand at 2121.178 kb on + strand at 2121.178 kb on + strand at 2121.191 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.064 mg/ml remove 2,118,155 + +0.4 2,118,155 + +0.5 2,118,270 + -1.5 2,118,283 + +0.5 2,118,712 - -1.0 2,118,843 + +0.1 2,118,966 - -1.2 2,118,966 - +1.2 2,118,976 - -1.3 2,119,016 - +0.3 2,119,032 + +2.2 2,119,032 + +0.6 2,119,040 - +0.8 2,119,068 - +0.2 2,119,147 + Shewana3_1791 0.14 -2.1 2,119,364 + Shewana3_1791 0.32 +0.6 2,119,372 + Shewana3_1791 0.33 +2.7 2,119,544 - Shewana3_1791 0.46 +0.6 2,119,944 - Shewana3_1791 0.79 -0.2 2,120,641 + Shewana3_1792 0.43 -1.0 2,120,699 + Shewana3_1792 0.50 +1.2 2,120,701 - Shewana3_1792 0.50 +1.2 2,120,747 + Shewana3_1792 0.55 -0.8 2,120,747 + Shewana3_1792 0.55 -0.4 2,120,747 + Shewana3_1792 0.55 -1.5 2,120,747 + Shewana3_1792 0.55 -0.0 2,120,753 + Shewana3_1792 0.56 +0.4 2,120,755 - Shewana3_1792 0.56 -0.8 2,120,755 - Shewana3_1792 0.56 -1.5 2,120,755 - Shewana3_1792 0.56 +0.8 2,120,755 - Shewana3_1792 0.56 -0.2 2,120,758 + Shewana3_1792 0.56 +0.6 2,120,761 - Shewana3_1792 0.57 +0.4 2,120,776 - Shewana3_1792 0.58 +2.3 2,120,846 + Shewana3_1792 0.66 +0.8 2,120,848 + Shewana3_1792 0.67 -1.6 2,120,854 - Shewana3_1792 0.67 -0.4 2,120,854 - Shewana3_1792 0.67 +0.4 2,120,854 - Shewana3_1792 0.67 +0.2 2,120,856 - Shewana3_1792 0.67 +0.4 2,120,856 - Shewana3_1792 0.67 +0.5 2,120,866 - Shewana3_1792 0.69 -2.5 2,120,886 + Shewana3_1792 0.71 +0.2 2,120,891 + Shewana3_1792 0.71 +1.4 2,120,895 - Shewana3_1792 0.72 +1.2 2,120,909 + Shewana3_1792 0.73 +3.2 2,120,924 - Shewana3_1792 0.75 -0.4 2,121,016 + Shewana3_1792 0.85 +0.6 2,121,017 - Shewana3_1792 0.86 +0.3 2,121,077 - +2.2 2,121,077 - -0.2 2,121,077 - -0.4 2,121,091 + +1.2 2,121,091 + +0.6 2,121,091 + +0.2 2,121,106 - +0.6 2,121,114 - -1.2 2,121,114 - +1.2 2,121,114 - -0.2 2,121,129 + +1.2 2,121,130 - -1.6 2,121,130 - +0.6 2,121,139 + +3.2 2,121,147 - +2.2 2,121,178 + -1.0 2,121,178 + +0.6 2,121,191 - -0.2
Or see this region's nucleotide sequence