Experiment: Thallium(I) acetate 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1788 and Shewana3_1789 are separated by 317 nucleotides Shewana3_1789 and Shewana3_1790 are separated by 257 nucleotides
Shewana3_1788: Shewana3_1788 - bifunctional acetaldehyde-CoA/alcohol dehydrogenase (RefSeq), at 2,112,522 to 2,115,122
_1788
Shewana3_1789: Shewana3_1789 - hypothetical protein (RefSeq), at 2,115,440 to 2,116,072
_1789
Shewana3_1790: Shewana3_1790 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 2,116,330 to 2,118,324
_1790
Position (kb)
2115
2116
2117 Strain fitness (log2 ratio)
-2
-1
0
1 at 2114.552 kb on + strand, within Shewana3_1788 at 2114.560 kb on - strand, within Shewana3_1788 at 2114.563 kb on + strand, within Shewana3_1788 at 2114.571 kb on - strand, within Shewana3_1788 at 2114.572 kb on - strand, within Shewana3_1788 at 2114.694 kb on - strand, within Shewana3_1788 at 2114.960 kb on - strand at 2115.141 kb on + strand at 2115.264 kb on + strand at 2115.269 kb on + strand at 2115.728 kb on + strand, within Shewana3_1789 at 2115.925 kb on + strand, within Shewana3_1789 at 2115.925 kb on + strand, within Shewana3_1789 at 2115.925 kb on + strand, within Shewana3_1789 at 2115.925 kb on + strand, within Shewana3_1789 at 2115.933 kb on - strand, within Shewana3_1789 at 2116.037 kb on + strand at 2116.113 kb on - strand at 2116.137 kb on - strand at 2116.320 kb on + strand at 2116.465 kb on - strand at 2116.546 kb on + strand, within Shewana3_1790 at 2116.914 kb on + strand, within Shewana3_1790
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.064 mg/ml remove 2,114,552 + Shewana3_1788 0.78 -0.4 2,114,560 - Shewana3_1788 0.78 +0.6 2,114,563 + Shewana3_1788 0.78 -0.1 2,114,571 - Shewana3_1788 0.79 -0.2 2,114,572 - Shewana3_1788 0.79 -0.9 2,114,694 - Shewana3_1788 0.84 +0.9 2,114,960 - +0.9 2,115,141 + -1.3 2,115,264 + -2.3 2,115,269 + -2.5 2,115,728 + Shewana3_1789 0.45 +0.8 2,115,925 + Shewana3_1789 0.77 +0.7 2,115,925 + Shewana3_1789 0.77 -0.0 2,115,925 + Shewana3_1789 0.77 +1.0 2,115,925 + Shewana3_1789 0.77 +0.4 2,115,933 - Shewana3_1789 0.78 +0.6 2,116,037 + +0.2 2,116,113 - +0.7 2,116,137 - +0.1 2,116,320 + -1.0 2,116,465 - +0.1 2,116,546 + Shewana3_1790 0.11 -2.5 2,116,914 + Shewana3_1790 0.29 -0.2
Or see this region's nucleotide sequence