Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1727

Experiment: Thallium(I) acetate 0.064 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1726 and Shewana3_1727 are separated by 220 nucleotidesShewana3_1727 and Shewana3_1728 are separated by 88 nucleotides Shewana3_1726: Shewana3_1726 - sodium:dicarboxylate symporter (RefSeq), at 2,028,777 to 2,030,090 _1726 Shewana3_1727: Shewana3_1727 - Ig domain-containing protein (RefSeq), at 2,030,311 to 2,033,985 _1727 Shewana3_1728: Shewana3_1728 - Succinylarginine dihydrolase (EC 3.5.3.23) (from data), at 2,034,074 to 2,035,408 _1728 Position (kb) 2030 2031 2032 2033 2034Strain fitness (log2 ratio) -2 -1 0 1 2at 2029.350 kb on - strand, within Shewana3_1726at 2029.352 kb on + strand, within Shewana3_1726at 2029.372 kb on - strand, within Shewana3_1726at 2029.388 kb on - strand, within Shewana3_1726at 2029.696 kb on - strand, within Shewana3_1726at 2029.710 kb on + strand, within Shewana3_1726at 2029.752 kb on + strand, within Shewana3_1726at 2030.291 kb on + strandat 2030.421 kb on - strandat 2030.776 kb on + strand, within Shewana3_1727at 2030.784 kb on - strand, within Shewana3_1727at 2030.810 kb on - strand, within Shewana3_1727at 2030.813 kb on + strand, within Shewana3_1727at 2030.923 kb on + strand, within Shewana3_1727at 2031.018 kb on + strand, within Shewana3_1727at 2031.078 kb on + strand, within Shewana3_1727at 2031.220 kb on + strand, within Shewana3_1727at 2031.641 kb on + strand, within Shewana3_1727at 2031.887 kb on + strand, within Shewana3_1727at 2031.929 kb on + strand, within Shewana3_1727at 2031.944 kb on + strand, within Shewana3_1727at 2031.949 kb on + strand, within Shewana3_1727at 2032.067 kb on - strand, within Shewana3_1727at 2032.307 kb on - strand, within Shewana3_1727at 2032.318 kb on + strand, within Shewana3_1727at 2032.330 kb on + strand, within Shewana3_1727at 2032.361 kb on + strand, within Shewana3_1727at 2032.710 kb on + strand, within Shewana3_1727at 2032.712 kb on + strand, within Shewana3_1727at 2032.720 kb on - strand, within Shewana3_1727at 2032.720 kb on - strand, within Shewana3_1727at 2032.847 kb on + strand, within Shewana3_1727at 2032.847 kb on + strand, within Shewana3_1727at 2032.855 kb on - strand, within Shewana3_1727at 2032.855 kb on - strand, within Shewana3_1727at 2032.893 kb on + strand, within Shewana3_1727at 2033.049 kb on - strand, within Shewana3_1727at 2033.061 kb on + strand, within Shewana3_1727at 2033.061 kb on + strand, within Shewana3_1727at 2033.061 kb on + strand, within Shewana3_1727at 2033.069 kb on - strand, within Shewana3_1727at 2033.086 kb on - strandat 2033.123 kb on + strand, within Shewana3_1727at 2033.124 kb on - strand, within Shewana3_1727at 2033.141 kb on - strand, within Shewana3_1727at 2033.214 kb on + strand, within Shewana3_1727at 2033.222 kb on - strand, within Shewana3_1727at 2033.264 kb on + strand, within Shewana3_1727at 2033.397 kb on - strand, within Shewana3_1727at 2033.482 kb on + strand, within Shewana3_1727at 2033.490 kb on - strand, within Shewana3_1727at 2033.583 kb on + strand, within Shewana3_1727at 2033.583 kb on + strand, within Shewana3_1727at 2033.629 kb on + strandat 2033.630 kb on + strandat 2033.670 kb on + strandat 2033.796 kb on + strandat 2033.909 kb on - strandat 2033.993 kb on + strandat 2034.065 kb on + strandat 2034.070 kb on + strandat 2034.088 kb on + strandat 2034.096 kb on - strandat 2034.132 kb on - strandat 2034.170 kb on + strandat 2034.464 kb on - strand, within Shewana3_1728at 2034.636 kb on - strand, within Shewana3_1728at 2034.848 kb on + strand, within Shewana3_1728at 2034.970 kb on + strand, within Shewana3_1728at 2034.985 kb on + strand, within Shewana3_1728

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.064 mg/ml
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2,029,350 - Shewana3_1726 0.44 +0.1
2,029,352 + Shewana3_1726 0.44 +0.6
2,029,372 - Shewana3_1726 0.45 +0.4
2,029,388 - Shewana3_1726 0.46 +1.0
2,029,696 - Shewana3_1726 0.70 +0.8
2,029,710 + Shewana3_1726 0.71 +0.2
2,029,752 + Shewana3_1726 0.74 +0.4
2,030,291 + +0.9
2,030,421 - -0.2
2,030,776 + Shewana3_1727 0.13 +1.0
2,030,784 - Shewana3_1727 0.13 +0.6
2,030,810 - Shewana3_1727 0.14 +1.2
2,030,813 + Shewana3_1727 0.14 +0.5
2,030,923 + Shewana3_1727 0.17 -0.8
2,031,018 + Shewana3_1727 0.19 +0.4
2,031,078 + Shewana3_1727 0.21 -0.6
2,031,220 + Shewana3_1727 0.25 -1.7
2,031,641 + Shewana3_1727 0.36 +1.2
2,031,887 + Shewana3_1727 0.43 -0.1
2,031,929 + Shewana3_1727 0.44 +1.7
2,031,944 + Shewana3_1727 0.44 -0.2
2,031,949 + Shewana3_1727 0.45 +0.2
2,032,067 - Shewana3_1727 0.48 +1.6
2,032,307 - Shewana3_1727 0.54 -1.3
2,032,318 + Shewana3_1727 0.55 -0.4
2,032,330 + Shewana3_1727 0.55 +1.2
2,032,361 + Shewana3_1727 0.56 +0.9
2,032,710 + Shewana3_1727 0.65 -0.3
2,032,712 + Shewana3_1727 0.65 +0.2
2,032,720 - Shewana3_1727 0.66 +0.6
2,032,720 - Shewana3_1727 0.66 -0.2
2,032,847 + Shewana3_1727 0.69 -1.9
2,032,847 + Shewana3_1727 0.69 -1.1
2,032,855 - Shewana3_1727 0.69 -0.4
2,032,855 - Shewana3_1727 0.69 +0.2
2,032,893 + Shewana3_1727 0.70 -0.8
2,033,049 - Shewana3_1727 0.75 -1.7
2,033,061 + Shewana3_1727 0.75 +1.2
2,033,061 + Shewana3_1727 0.75 -1.8
2,033,061 + Shewana3_1727 0.75 +0.8
2,033,069 - Shewana3_1727 0.75 +2.2
2,033,086 - +2.2
2,033,123 + Shewana3_1727 0.77 +0.6
2,033,124 - Shewana3_1727 0.77 +2.2
2,033,141 - Shewana3_1727 0.77 +1.2
2,033,214 + Shewana3_1727 0.79 -2.4
2,033,222 - Shewana3_1727 0.79 -0.8
2,033,264 + Shewana3_1727 0.80 -0.5
2,033,397 - Shewana3_1727 0.84 -1.2
2,033,482 + Shewana3_1727 0.86 -0.3
2,033,490 - Shewana3_1727 0.87 -0.7
2,033,583 + Shewana3_1727 0.89 -0.9
2,033,583 + Shewana3_1727 0.89 -0.2
2,033,629 + +0.7
2,033,630 + -0.4
2,033,670 + +0.8
2,033,796 + +0.8
2,033,909 - +0.2
2,033,993 + +0.3
2,034,065 + +0.2
2,034,070 + -0.7
2,034,088 + -0.7
2,034,096 - +0.6
2,034,132 - -1.0
2,034,170 + -0.2
2,034,464 - Shewana3_1728 0.29 -1.5
2,034,636 - Shewana3_1728 0.42 -0.4
2,034,848 + Shewana3_1728 0.58 -1.8
2,034,970 + Shewana3_1728 0.67 -0.2
2,034,985 + Shewana3_1728 0.68 -0.3

Or see this region's nucleotide sequence