Experiment: Thallium(I) acetate 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1539 and Shewana3_1540 are separated by 280 nucleotides Shewana3_1540 and Shewana3_1541 are separated by 86 nucleotides
Shewana3_1539: Shewana3_1539 - hypothetical protein (RefSeq), at 1,794,542 to 1,797,043
_1539
Shewana3_1540: Shewana3_1540 - signal peptidase I (RefSeq), at 1,797,324 to 1,797,986
_1540
Shewana3_1541: Shewana3_1541 - sodium/glutamate symporter (RefSeq), at 1,798,073 to 1,799,296
_1541
Position (kb)
1797
1798 Strain fitness (log2 ratio)
-2
-1
0
1 at 1796.327 kb on - strand, within Shewana3_1539 at 1796.327 kb on - strand, within Shewana3_1539 at 1796.343 kb on + strand, within Shewana3_1539 at 1796.368 kb on - strand, within Shewana3_1539 at 1796.557 kb on - strand, within Shewana3_1539 at 1796.640 kb on + strand, within Shewana3_1539 at 1796.772 kb on + strand, within Shewana3_1539 at 1796.884 kb on + strand at 1797.124 kb on + strand at 1797.382 kb on + strand at 1797.390 kb on - strand at 1797.390 kb on - strand at 1797.403 kb on - strand, within Shewana3_1540 at 1797.682 kb on - strand, within Shewana3_1540 at 1797.684 kb on - strand, within Shewana3_1540 at 1797.684 kb on - strand, within Shewana3_1540 at 1797.765 kb on - strand, within Shewana3_1540 at 1797.870 kb on + strand, within Shewana3_1540 at 1797.897 kb on - strand, within Shewana3_1540 at 1798.153 kb on + strand at 1798.274 kb on - strand, within Shewana3_1541 at 1798.274 kb on - strand, within Shewana3_1541 at 1798.356 kb on + strand, within Shewana3_1541 at 1798.618 kb on - strand, within Shewana3_1541 at 1798.653 kb on + strand, within Shewana3_1541 at 1798.661 kb on - strand, within Shewana3_1541 at 1798.663 kb on + strand, within Shewana3_1541 at 1798.671 kb on - strand, within Shewana3_1541 at 1798.789 kb on + strand, within Shewana3_1541 at 1798.798 kb on - strand, within Shewana3_1541 at 1798.932 kb on - strand, within Shewana3_1541
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.064 mg/ml remove 1,796,327 - Shewana3_1539 0.71 -2.1 1,796,327 - Shewana3_1539 0.71 +0.8 1,796,343 + Shewana3_1539 0.72 -1.2 1,796,368 - Shewana3_1539 0.73 +0.4 1,796,557 - Shewana3_1539 0.81 -1.2 1,796,640 + Shewana3_1539 0.84 +1.1 1,796,772 + Shewana3_1539 0.89 -1.0 1,796,884 + -0.4 1,797,124 + +0.7 1,797,382 + -0.8 1,797,390 - +1.0 1,797,390 - +0.3 1,797,403 - Shewana3_1540 0.12 -1.0 1,797,682 - Shewana3_1540 0.54 -1.5 1,797,684 - Shewana3_1540 0.54 +1.0 1,797,684 - Shewana3_1540 0.54 -2.3 1,797,765 - Shewana3_1540 0.67 -1.5 1,797,870 + Shewana3_1540 0.82 +0.5 1,797,897 - Shewana3_1540 0.86 -0.0 1,798,153 + +0.0 1,798,274 - Shewana3_1541 0.16 +0.8 1,798,274 - Shewana3_1541 0.16 +0.5 1,798,356 + Shewana3_1541 0.23 -0.0 1,798,618 - Shewana3_1541 0.45 +0.9 1,798,653 + Shewana3_1541 0.47 -1.4 1,798,661 - Shewana3_1541 0.48 +0.8 1,798,663 + Shewana3_1541 0.48 -1.0 1,798,671 - Shewana3_1541 0.49 +0.9 1,798,789 + Shewana3_1541 0.58 +0.1 1,798,798 - Shewana3_1541 0.59 +0.7 1,798,932 - Shewana3_1541 0.70 -0.1
Or see this region's nucleotide sequence