Experiment: Thallium(I) acetate 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1508 and Shewana3_1509 overlap by 4 nucleotides Shewana3_1509 and Shewana3_1510 overlap by 1 nucleotides Shewana3_1510 and Shewana3_1511 are separated by 579 nucleotides
Shewana3_1508: Shewana3_1508 - IucA/IucC family protein (RefSeq), at 1,755,913 to 1,757,808
_1508
Shewana3_1509: Shewana3_1509 - siderophore biosynthesis protein, putative (RefSeq), at 1,757,805 to 1,758,470
_1509
Shewana3_1510: Shewana3_1510 - siderophore biosynthesis protein (RefSeq), at 1,758,470 to 1,759,960
_1510
Shewana3_1511: Shewana3_1511 - hypothetical protein (RefSeq), at 1,760,540 to 1,760,821
_1511
Position (kb)
1758
1759
1760 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1757.490 kb on - strand, within Shewana3_1508 at 1757.699 kb on - strand at 1757.816 kb on + strand at 1757.872 kb on + strand, within Shewana3_1509 at 1758.090 kb on - strand, within Shewana3_1509 at 1758.147 kb on + strand, within Shewana3_1509 at 1758.178 kb on + strand, within Shewana3_1509 at 1758.178 kb on + strand, within Shewana3_1509 at 1758.186 kb on - strand, within Shewana3_1509 at 1758.435 kb on - strand at 1758.664 kb on - strand, within Shewana3_1510 at 1758.764 kb on - strand, within Shewana3_1510 at 1758.774 kb on - strand, within Shewana3_1510 at 1758.969 kb on + strand, within Shewana3_1510 at 1759.054 kb on - strand, within Shewana3_1510 at 1759.301 kb on - strand, within Shewana3_1510 at 1759.440 kb on + strand, within Shewana3_1510 at 1759.502 kb on + strand, within Shewana3_1510 at 1759.510 kb on - strand, within Shewana3_1510 at 1759.691 kb on - strand, within Shewana3_1510 at 1760.226 kb on + strand at 1760.392 kb on - strand at 1760.643 kb on - strand, within Shewana3_1511 at 1760.835 kb on + strand at 1760.869 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.064 mg/ml remove 1,757,490 - Shewana3_1508 0.83 -0.7 1,757,699 - -1.6 1,757,816 + -0.4 1,757,872 + Shewana3_1509 0.10 +0.1 1,758,090 - Shewana3_1509 0.43 -0.4 1,758,147 + Shewana3_1509 0.51 +2.0 1,758,178 + Shewana3_1509 0.56 -0.0 1,758,178 + Shewana3_1509 0.56 -0.6 1,758,186 - Shewana3_1509 0.57 -1.7 1,758,435 - -0.6 1,758,664 - Shewana3_1510 0.13 +0.4 1,758,764 - Shewana3_1510 0.20 -1.2 1,758,774 - Shewana3_1510 0.20 -2.7 1,758,969 + Shewana3_1510 0.33 +0.0 1,759,054 - Shewana3_1510 0.39 -3.3 1,759,301 - Shewana3_1510 0.56 -0.3 1,759,440 + Shewana3_1510 0.65 -0.7 1,759,502 + Shewana3_1510 0.69 +0.4 1,759,510 - Shewana3_1510 0.70 -0.0 1,759,691 - Shewana3_1510 0.82 +0.4 1,760,226 + -1.5 1,760,392 - -0.4 1,760,643 - Shewana3_1511 0.37 +0.3 1,760,835 + +0.8 1,760,869 - -0.7
Or see this region's nucleotide sequence