Experiment: Thallium(I) acetate 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1441 and Shewana3_1442 are separated by 86 nucleotides Shewana3_1442 and Shewana3_1443 are separated by 40 nucleotides Shewana3_1443 and Shewana3_1444 are separated by 584 nucleotides
Shewana3_1441: Shewana3_1441 - siroheme synthase (RefSeq), at 1,669,846 to 1,670,757
_1441
Shewana3_1442: Shewana3_1442 - YaeQ family protein (RefSeq), at 1,670,844 to 1,671,389
_1442
Shewana3_1443: Shewana3_1443 - peptidase S8 and S53, subtilisin, kexin, sedolisin (RefSeq), at 1,671,430 to 1,673,859
_1443
Shewana3_1444: Shewana3_1444 - rhodanese domain-containing protein (RefSeq), at 1,674,444 to 1,674,842
_1444
Position (kb)
1671
1672
1673
1674 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1670.801 kb on - strand at 1670.847 kb on - strand at 1671.275 kb on - strand, within Shewana3_1442 at 1671.539 kb on + strand at 1671.661 kb on - strand at 1671.712 kb on + strand, within Shewana3_1443 at 1671.712 kb on + strand, within Shewana3_1443 at 1671.796 kb on + strand, within Shewana3_1443 at 1671.804 kb on - strand, within Shewana3_1443 at 1671.804 kb on - strand, within Shewana3_1443 at 1671.830 kb on - strand, within Shewana3_1443 at 1671.961 kb on + strand, within Shewana3_1443 at 1672.527 kb on - strand, within Shewana3_1443 at 1672.532 kb on - strand, within Shewana3_1443 at 1672.608 kb on + strand, within Shewana3_1443 at 1672.616 kb on - strand, within Shewana3_1443 at 1672.650 kb on - strand, within Shewana3_1443 at 1673.005 kb on + strand, within Shewana3_1443 at 1673.192 kb on - strand, within Shewana3_1443 at 1673.246 kb on - strand, within Shewana3_1443 at 1673.341 kb on + strand, within Shewana3_1443 at 1673.349 kb on - strand, within Shewana3_1443 at 1673.349 kb on - strand, within Shewana3_1443 at 1673.539 kb on - strand, within Shewana3_1443 at 1673.581 kb on + strand, within Shewana3_1443 at 1673.589 kb on - strand, within Shewana3_1443 at 1673.677 kb on + strand at 1673.685 kb on - strand at 1673.783 kb on + strand at 1674.482 kb on - strand at 1674.544 kb on - strand, within Shewana3_1444 at 1674.679 kb on - strand, within Shewana3_1444
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.064 mg/ml remove 1,670,801 - -2.8 1,670,847 - -0.9 1,671,275 - Shewana3_1442 0.79 +1.8 1,671,539 + -4.3 1,671,661 - -0.1 1,671,712 + Shewana3_1443 0.12 -1.0 1,671,712 + Shewana3_1443 0.12 -0.5 1,671,796 + Shewana3_1443 0.15 -0.3 1,671,804 - Shewana3_1443 0.15 -0.6 1,671,804 - Shewana3_1443 0.15 -1.2 1,671,830 - Shewana3_1443 0.16 -0.0 1,671,961 + Shewana3_1443 0.22 -0.2 1,672,527 - Shewana3_1443 0.45 -0.1 1,672,532 - Shewana3_1443 0.45 -0.2 1,672,608 + Shewana3_1443 0.48 -0.6 1,672,616 - Shewana3_1443 0.49 -0.5 1,672,650 - Shewana3_1443 0.50 -0.7 1,673,005 + Shewana3_1443 0.65 +1.0 1,673,192 - Shewana3_1443 0.73 +0.6 1,673,246 - Shewana3_1443 0.75 +0.5 1,673,341 + Shewana3_1443 0.79 -2.2 1,673,349 - Shewana3_1443 0.79 -0.5 1,673,349 - Shewana3_1443 0.79 -1.3 1,673,539 - Shewana3_1443 0.87 -1.1 1,673,581 + Shewana3_1443 0.89 +0.3 1,673,589 - Shewana3_1443 0.89 -0.2 1,673,677 + +0.3 1,673,685 - +0.2 1,673,783 + -2.4 1,674,482 - -0.2 1,674,544 - Shewana3_1444 0.25 +1.3 1,674,679 - Shewana3_1444 0.59 -0.1
Or see this region's nucleotide sequence