Experiment: Thallium(I) acetate 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1414 and Shewana3_1415 overlap by 1 nucleotides Shewana3_1415 and Shewana3_1416 are separated by 62 nucleotides
Shewana3_1414: Shewana3_1414 - TRAP dicarboxylate transporter, DctM subunit (RefSeq), at 1,638,728 to 1,640,125
_1414
Shewana3_1415: Shewana3_1415 - tripartite ATP-independent periplasmic transporter DctQ (RefSeq), at 1,640,125 to 1,640,769
_1415
Shewana3_1416: Shewana3_1416 - TRAP dicarboxylate transporter, DctP subunit (RefSeq), at 1,640,832 to 1,641,854
_1416
Position (kb)
1640
1641 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1639.220 kb on - strand, within Shewana3_1414 at 1639.282 kb on - strand, within Shewana3_1414 at 1639.449 kb on + strand, within Shewana3_1414 at 1639.475 kb on + strand, within Shewana3_1414 at 1639.477 kb on - strand, within Shewana3_1414 at 1639.662 kb on + strand, within Shewana3_1414 at 1639.798 kb on - strand, within Shewana3_1414 at 1639.821 kb on - strand, within Shewana3_1414 at 1639.967 kb on - strand, within Shewana3_1414 at 1640.246 kb on + strand, within Shewana3_1415 at 1640.302 kb on + strand, within Shewana3_1415 at 1640.391 kb on - strand, within Shewana3_1415 at 1640.456 kb on - strand, within Shewana3_1415 at 1640.574 kb on - strand, within Shewana3_1415 at 1640.578 kb on + strand, within Shewana3_1415 at 1640.588 kb on + strand, within Shewana3_1415 at 1640.588 kb on + strand, within Shewana3_1415 at 1640.625 kb on + strand, within Shewana3_1415 at 1640.625 kb on + strand, within Shewana3_1415 at 1640.633 kb on - strand, within Shewana3_1415 at 1641.062 kb on + strand, within Shewana3_1416 at 1641.105 kb on + strand, within Shewana3_1416 at 1641.120 kb on + strand, within Shewana3_1416 at 1641.123 kb on - strand, within Shewana3_1416 at 1641.184 kb on + strand, within Shewana3_1416 at 1641.192 kb on - strand, within Shewana3_1416 at 1641.280 kb on + strand, within Shewana3_1416 at 1641.364 kb on - strand at 1641.500 kb on - strand, within Shewana3_1416 at 1641.655 kb on + strand, within Shewana3_1416 at 1641.769 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.064 mg/ml remove 1,639,220 - Shewana3_1414 0.35 -0.1 1,639,282 - Shewana3_1414 0.40 -0.2 1,639,449 + Shewana3_1414 0.52 -1.4 1,639,475 + Shewana3_1414 0.53 +0.9 1,639,477 - Shewana3_1414 0.54 -1.0 1,639,662 + Shewana3_1414 0.67 +0.6 1,639,798 - Shewana3_1414 0.77 -1.0 1,639,821 - Shewana3_1414 0.78 -1.0 1,639,967 - Shewana3_1414 0.89 -0.2 1,640,246 + Shewana3_1415 0.19 -1.0 1,640,302 + Shewana3_1415 0.27 +0.8 1,640,391 - Shewana3_1415 0.41 -0.5 1,640,456 - Shewana3_1415 0.51 +0.8 1,640,574 - Shewana3_1415 0.70 +0.2 1,640,578 + Shewana3_1415 0.70 +1.5 1,640,588 + Shewana3_1415 0.72 +0.7 1,640,588 + Shewana3_1415 0.72 +0.1 1,640,625 + Shewana3_1415 0.78 -0.2 1,640,625 + Shewana3_1415 0.78 +0.6 1,640,633 - Shewana3_1415 0.79 +1.8 1,641,062 + Shewana3_1416 0.22 -2.3 1,641,105 + Shewana3_1416 0.27 -0.2 1,641,120 + Shewana3_1416 0.28 -0.8 1,641,123 - Shewana3_1416 0.28 +0.2 1,641,184 + Shewana3_1416 0.34 +0.2 1,641,192 - Shewana3_1416 0.35 -0.4 1,641,280 + Shewana3_1416 0.44 +0.9 1,641,364 - +0.2 1,641,500 - Shewana3_1416 0.65 +0.4 1,641,655 + Shewana3_1416 0.80 -1.0 1,641,769 - +0.8
Or see this region's nucleotide sequence