Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1379

Experiment: Thallium(I) acetate 0.064 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_1377 and Shewana3_1378 are separated by 0 nucleotidesShewana3_1378 and Shewana3_1379 are separated by 12 nucleotidesShewana3_1379 and Shewana3_1380 are separated by 70 nucleotides Shewana3_1377: Shewana3_1377 - sugar transferase (RefSeq), at 1,592,670 to 1,593,659 _1377 Shewana3_1378: Shewana3_1378 - glycosyl transferase family protein (RefSeq), at 1,593,660 to 1,594,409 _1378 Shewana3_1379: Shewana3_1379 - dTDP-glucose 4,6 dehydratase (RefSeq), at 1,594,422 to 1,595,501 _1379 Shewana3_1380: Shewana3_1380 - glucose-1-phosphate thymidylyltransferase (RefSeq), at 1,595,572 to 1,596,432 _1380 Position (kb) 1594 1595 1596Strain fitness (log2 ratio) -1 0 1 2 3at 1593.483 kb on + strand, within Shewana3_1377at 1593.483 kb on + strand, within Shewana3_1377at 1593.483 kb on + strand, within Shewana3_1377at 1593.483 kb on + strand, within Shewana3_1377at 1593.483 kb on + strand, within Shewana3_1377at 1593.491 kb on + strand, within Shewana3_1377at 1593.493 kb on + strand, within Shewana3_1377at 1593.501 kb on + strand, within Shewana3_1377at 1593.529 kb on + strand, within Shewana3_1377at 1593.660 kb on + strandat 1593.697 kb on + strandat 1593.697 kb on + strandat 1593.697 kb on + strandat 1593.697 kb on + strandat 1593.697 kb on + strandat 1593.697 kb on + strandat 1593.697 kb on + strandat 1593.727 kb on + strandat 1593.826 kb on + strand, within Shewana3_1378at 1593.834 kb on - strand, within Shewana3_1378at 1593.837 kb on + strand, within Shewana3_1378at 1593.888 kb on + strand, within Shewana3_1378at 1593.946 kb on + strand, within Shewana3_1378at 1594.010 kb on + strand, within Shewana3_1378at 1594.018 kb on + strand, within Shewana3_1378at 1594.123 kb on + strand, within Shewana3_1378at 1594.125 kb on + strand, within Shewana3_1378at 1594.125 kb on + strand, within Shewana3_1378at 1594.125 kb on + strand, within Shewana3_1378at 1594.125 kb on + strand, within Shewana3_1378at 1594.125 kb on + strand, within Shewana3_1378at 1594.125 kb on + strand, within Shewana3_1378at 1594.125 kb on + strand, within Shewana3_1378at 1594.125 kb on + strand, within Shewana3_1378at 1594.125 kb on + strand, within Shewana3_1378at 1594.125 kb on + strand, within Shewana3_1378at 1594.125 kb on + strand, within Shewana3_1378at 1594.133 kb on - strand, within Shewana3_1378at 1594.133 kb on - strand, within Shewana3_1378at 1594.149 kb on + strand, within Shewana3_1378at 1594.180 kb on + strand, within Shewana3_1378at 1594.184 kb on + strand, within Shewana3_1378at 1594.185 kb on + strand, within Shewana3_1378at 1594.185 kb on + strand, within Shewana3_1378at 1594.186 kb on + strand, within Shewana3_1378at 1594.217 kb on + strand, within Shewana3_1378at 1594.226 kb on + strand, within Shewana3_1378at 1594.226 kb on + strand, within Shewana3_1378at 1594.226 kb on + strand, within Shewana3_1378at 1594.226 kb on + strand, within Shewana3_1378at 1594.321 kb on + strand, within Shewana3_1378at 1594.321 kb on + strand, within Shewana3_1378at 1594.380 kb on + strandat 1595.429 kb on + strandat 1595.429 kb on + strandat 1595.442 kb on + strandat 1595.460 kb on + strandat 1595.460 kb on + strandat 1595.470 kb on + strandat 1595.470 kb on + strandat 1595.470 kb on + strandat 1595.480 kb on + strandat 1595.480 kb on + strandat 1595.526 kb on + strandat 1596.446 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.064 mg/ml
remove
1,593,483 + Shewana3_1377 0.82 +0.8
1,593,483 + Shewana3_1377 0.82 +0.5
1,593,483 + Shewana3_1377 0.82 +0.4
1,593,483 + Shewana3_1377 0.82 +2.0
1,593,483 + Shewana3_1377 0.82 +0.7
1,593,491 + Shewana3_1377 0.83 +2.8
1,593,493 + Shewana3_1377 0.83 +0.9
1,593,501 + Shewana3_1377 0.84 +2.7
1,593,529 + Shewana3_1377 0.87 +0.5
1,593,660 + +1.8
1,593,697 + +2.9
1,593,697 + +2.9
1,593,697 + +1.6
1,593,697 + -0.6
1,593,697 + +2.3
1,593,697 + +0.3
1,593,697 + +3.0
1,593,727 + +2.7
1,593,826 + Shewana3_1378 0.22 +1.8
1,593,834 - Shewana3_1378 0.23 +0.8
1,593,837 + Shewana3_1378 0.24 +1.4
1,593,888 + Shewana3_1378 0.30 +3.1
1,593,946 + Shewana3_1378 0.38 +1.4
1,594,010 + Shewana3_1378 0.47 +3.3
1,594,018 + Shewana3_1378 0.48 +1.7
1,594,123 + Shewana3_1378 0.62 +1.3
1,594,125 + Shewana3_1378 0.62 +3.3
1,594,125 + Shewana3_1378 0.62 +1.6
1,594,125 + Shewana3_1378 0.62 +2.4
1,594,125 + Shewana3_1378 0.62 +1.2
1,594,125 + Shewana3_1378 0.62 +0.9
1,594,125 + Shewana3_1378 0.62 +1.5
1,594,125 + Shewana3_1378 0.62 +1.6
1,594,125 + Shewana3_1378 0.62 +1.5
1,594,125 + Shewana3_1378 0.62 +1.1
1,594,125 + Shewana3_1378 0.62 +3.2
1,594,125 + Shewana3_1378 0.62 +3.4
1,594,133 - Shewana3_1378 0.63 +0.2
1,594,133 - Shewana3_1378 0.63 +0.8
1,594,149 + Shewana3_1378 0.65 +1.4
1,594,180 + Shewana3_1378 0.69 +1.2
1,594,184 + Shewana3_1378 0.70 +1.7
1,594,185 + Shewana3_1378 0.70 +1.6
1,594,185 + Shewana3_1378 0.70 +1.2
1,594,186 + Shewana3_1378 0.70 +2.0
1,594,217 + Shewana3_1378 0.74 +3.3
1,594,226 + Shewana3_1378 0.75 +1.7
1,594,226 + Shewana3_1378 0.75 +3.3
1,594,226 + Shewana3_1378 0.75 +3.2
1,594,226 + Shewana3_1378 0.75 +1.4
1,594,321 + Shewana3_1378 0.88 +2.5
1,594,321 + Shewana3_1378 0.88 +0.9
1,594,380 + +1.3
1,595,429 + -0.1
1,595,429 + +1.1
1,595,442 + +0.9
1,595,460 + +1.0
1,595,460 + +1.9
1,595,470 + +1.8
1,595,470 + +1.6
1,595,470 + +0.4
1,595,480 + +1.3
1,595,480 + +1.1
1,595,526 + +1.8
1,596,446 + +0.1

Or see this region's nucleotide sequence