Experiment: Thallium(I) acetate 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1335 and Shewana3_1336 are separated by 18 nucleotides Shewana3_1336 and fliS are separated by 6 nucleotides fliS and Shewana3_1338 are separated by 286 nucleotides
Shewana3_1335: Shewana3_1335 - flagellar hook-associated 2 domain-containing protein (RefSeq), at 1,547,975 to 1,549,345
_1335
Shewana3_1336: Shewana3_1336 - hypothetical protein (RefSeq), at 1,549,364 to 1,549,693
_1336
Shewana3_1337: fliS - flagellar protein FliS (RefSeq), at 1,549,700 to 1,550,113
fliS
Shewana3_1338: Shewana3_1338 - sigma-54 dependent trancsriptional regulator (RefSeq), at 1,550,400 to 1,551,833
_1338
Position (kb)
1549
1550 Strain fitness (log2 ratio)
-1
0
1
2
3 at 1548.467 kb on + strand, within Shewana3_1335 at 1548.569 kb on - strand, within Shewana3_1335 at 1548.628 kb on + strand, within Shewana3_1335 at 1548.794 kb on + strand, within Shewana3_1335 at 1548.794 kb on + strand, within Shewana3_1335 at 1549.254 kb on + strand at 1549.298 kb on - strand at 1549.321 kb on + strand at 1549.512 kb on + strand, within Shewana3_1336 at 1549.562 kb on + strand, within Shewana3_1336 at 1549.571 kb on - strand, within Shewana3_1336 at 1549.694 kb on + strand at 1549.742 kb on + strand, within fliS at 1549.811 kb on + strand, within fliS at 1549.811 kb on + strand, within fliS at 1549.811 kb on + strand, within fliS at 1549.819 kb on - strand, within fliS at 1550.052 kb on + strand, within fliS at 1550.143 kb on + strand at 1550.204 kb on - strand at 1550.280 kb on + strand at 1550.298 kb on - strand at 1550.305 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.064 mg/ml remove 1,548,467 + Shewana3_1335 0.36 -1.0 1,548,569 - Shewana3_1335 0.43 -1.4 1,548,628 + Shewana3_1335 0.48 +1.5 1,548,794 + Shewana3_1335 0.60 +2.8 1,548,794 + Shewana3_1335 0.60 +1.5 1,549,254 + +1.0 1,549,298 - +1.8 1,549,321 + +0.9 1,549,512 + Shewana3_1336 0.45 +1.1 1,549,562 + Shewana3_1336 0.60 +2.3 1,549,571 - Shewana3_1336 0.63 -0.6 1,549,694 + +1.0 1,549,742 + fliS Shewana3_1337 0.10 +2.3 1,549,811 + fliS Shewana3_1337 0.27 +2.2 1,549,811 + fliS Shewana3_1337 0.27 +2.6 1,549,811 + fliS Shewana3_1337 0.27 +1.8 1,549,819 - fliS Shewana3_1337 0.29 +0.8 1,550,052 + fliS Shewana3_1337 0.85 +1.4 1,550,143 + -0.5 1,550,204 - -0.3 1,550,280 + +0.1 1,550,298 - +1.1 1,550,305 - +1.1
Or see this region's nucleotide sequence