Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1328

Experiment: Thallium(I) acetate 0.064 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntflgG and flgH are separated by 12 nucleotidesflgH and flgI are separated by 11 nucleotidesflgI and flgJ are separated by 17 nucleotides Shewana3_1326: flgG - flagellar basal body rod protein FlgG (RefSeq), at 1,538,465 to 1,539,253 flgG Shewana3_1327: flgH - flagellar basal body L-ring protein (RefSeq), at 1,539,266 to 1,539,940 flgH Shewana3_1328: flgI - flagellar basal body P-ring protein (RefSeq), at 1,539,952 to 1,541,043 flgI Shewana3_1329: flgJ - flagellar rod assembly protein/muramidase FlgJ (RefSeq), at 1,541,061 to 1,542,230 flgJ Position (kb) 1539 1540 1541 1542Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1538.988 kb on + strand, within flgGat 1539.000 kb on + strand, within flgGat 1539.328 kb on - strandat 1539.717 kb on + strand, within flgHat 1539.725 kb on - strand, within flgHat 1540.135 kb on - strand, within flgIat 1540.320 kb on + strand, within flgIat 1540.394 kb on + strand, within flgIat 1540.401 kb on - strand, within flgIat 1540.403 kb on + strand, within flgIat 1540.411 kb on - strand, within flgIat 1540.574 kb on + strand, within flgIat 1540.617 kb on - strand, within flgIat 1540.642 kb on + strand, within flgIat 1540.843 kb on + strand, within flgIat 1540.869 kb on + strand, within flgIat 1541.157 kb on - strandat 1541.362 kb on - strand, within flgJat 1541.373 kb on - strand, within flgJat 1541.798 kb on + strand, within flgJat 1541.900 kb on - strand, within flgJat 1541.972 kb on + strand, within flgJ

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.064 mg/ml
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1,538,988 + flgG Shewana3_1326 0.66 +0.3
1,539,000 + flgG Shewana3_1326 0.68 -0.0
1,539,328 - +0.2
1,539,717 + flgH Shewana3_1327 0.67 -3.2
1,539,725 - flgH Shewana3_1327 0.68 -1.2
1,540,135 - flgI Shewana3_1328 0.17 -1.0
1,540,320 + flgI Shewana3_1328 0.34 +1.5
1,540,394 + flgI Shewana3_1328 0.40 +0.6
1,540,401 - flgI Shewana3_1328 0.41 +0.4
1,540,403 + flgI Shewana3_1328 0.41 +0.1
1,540,411 - flgI Shewana3_1328 0.42 -2.1
1,540,574 + flgI Shewana3_1328 0.57 +1.6
1,540,617 - flgI Shewana3_1328 0.61 -0.2
1,540,642 + flgI Shewana3_1328 0.63 +2.0
1,540,843 + flgI Shewana3_1328 0.82 +1.4
1,540,869 + flgI Shewana3_1328 0.84 +0.4
1,541,157 - -1.1
1,541,362 - flgJ Shewana3_1329 0.26 +0.2
1,541,373 - flgJ Shewana3_1329 0.27 +0.3
1,541,798 + flgJ Shewana3_1329 0.63 -0.2
1,541,900 - flgJ Shewana3_1329 0.72 -1.4
1,541,972 + flgJ Shewana3_1329 0.78 +1.2

Or see this region's nucleotide sequence