Experiment: Thallium(I) acetate 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1320 and flgB are separated by 144 nucleotides flgB and flgC are separated by 2 nucleotides flgC and flgD are separated by 24 nucleotides flgD and flgE are separated by 69 nucleotides
Shewana3_1320: Shewana3_1320 - MCP methyltransferase, CheR-type (RefSeq), at 1,533,497 to 1,534,336
_1320
Shewana3_1321: flgB - flagellar basal body rod protein FlgB (RefSeq), at 1,534,481 to 1,534,885
flgB
Shewana3_1322: flgC - flagellar basal body rod protein FlgC (RefSeq), at 1,534,888 to 1,535,304
flgC
Shewana3_1323: flgD - flagellar basal body rod modification protein (RefSeq), at 1,535,329 to 1,536,108
flgD
Shewana3_1324: flgE - flagellar hook protein FlgE (RefSeq), at 1,536,178 to 1,537,539
flgE
Position (kb)
1534
1535
1536 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1534.509 kb on - strand at 1534.630 kb on - strand, within flgB at 1534.825 kb on - strand, within flgB at 1535.096 kb on + strand, within flgC at 1535.231 kb on + strand, within flgC at 1535.267 kb on + strand at 1535.482 kb on + strand, within flgD at 1535.490 kb on + strand, within flgD at 1535.490 kb on + strand, within flgD at 1535.490 kb on - strand, within flgD at 1535.498 kb on - strand, within flgD at 1535.769 kb on - strand, within flgD at 1535.854 kb on - strand, within flgD at 1535.861 kb on + strand, within flgD at 1536.068 kb on + strand at 1536.076 kb on - strand at 1536.223 kb on + strand at 1536.255 kb on + strand at 1536.271 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.064 mg/ml remove 1,534,509 - -2.3 1,534,630 - flgB Shewana3_1321 0.37 +1.7 1,534,825 - flgB Shewana3_1321 0.85 +0.7 1,535,096 + flgC Shewana3_1322 0.50 +2.4 1,535,231 + flgC Shewana3_1322 0.82 +2.4 1,535,267 + +1.3 1,535,482 + flgD Shewana3_1323 0.20 +2.2 1,535,490 + flgD Shewana3_1323 0.21 +2.3 1,535,490 + flgD Shewana3_1323 0.21 +3.1 1,535,490 - flgD Shewana3_1323 0.21 -2.3 1,535,498 - flgD Shewana3_1323 0.22 -0.2 1,535,769 - flgD Shewana3_1323 0.56 -0.6 1,535,854 - flgD Shewana3_1323 0.67 -0.8 1,535,861 + flgD Shewana3_1323 0.68 +2.6 1,536,068 + +2.4 1,536,076 - -1.7 1,536,223 + +1.5 1,536,255 + +2.2 1,536,271 + +2.8
Or see this region's nucleotide sequence