Experiment: Thallium(I) acetate 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1288 and Shewana3_1289 are separated by 18 nucleotides Shewana3_1289 and Shewana3_1290 overlap by 4 nucleotides Shewana3_1290 and Shewana3_1291 are separated by 2 nucleotides
Shewana3_1288: Shewana3_1288 - conjugal transfer protein TrbL (RefSeq), at 1,498,780 to 1,500,162
_1288
Shewana3_1289: Shewana3_1289 - conjugal transfer protein TrbF (RefSeq), at 1,500,181 to 1,500,885
_1289
Shewana3_1290: Shewana3_1290 - conjugal transfer protein TrbG/VirB9/CagX (RefSeq), at 1,500,882 to 1,501,874
_1290
Shewana3_1291: Shewana3_1291 - conjugation TrbI family protein (RefSeq), at 1,501,877 to 1,503,157
_1291
Position (kb)
1500
1501
1502 Strain fitness (log2 ratio)
-1
0
1
2 at 1499.899 kb on + strand, within Shewana3_1288 at 1499.907 kb on - strand, within Shewana3_1288 at 1500.028 kb on - strand at 1500.092 kb on + strand at 1500.130 kb on - strand at 1500.217 kb on - strand at 1500.291 kb on + strand, within Shewana3_1289 at 1500.313 kb on + strand, within Shewana3_1289 at 1500.313 kb on + strand, within Shewana3_1289 at 1500.313 kb on + strand, within Shewana3_1289 at 1500.347 kb on + strand, within Shewana3_1289 at 1500.347 kb on - strand, within Shewana3_1289 at 1500.347 kb on - strand, within Shewana3_1289 at 1500.401 kb on + strand, within Shewana3_1289 at 1500.420 kb on + strand, within Shewana3_1289 at 1500.697 kb on - strand, within Shewana3_1289 at 1500.717 kb on - strand, within Shewana3_1289 at 1501.022 kb on + strand, within Shewana3_1290 at 1501.075 kb on - strand, within Shewana3_1290 at 1501.075 kb on - strand, within Shewana3_1290 at 1501.173 kb on + strand, within Shewana3_1290 at 1501.202 kb on - strand, within Shewana3_1290 at 1501.240 kb on - strand, within Shewana3_1290 at 1501.374 kb on - strand, within Shewana3_1290 at 1501.379 kb on - strand, within Shewana3_1290 at 1501.556 kb on + strand, within Shewana3_1290 at 1501.681 kb on + strand, within Shewana3_1290 at 1501.764 kb on + strand, within Shewana3_1290 at 1502.307 kb on - strand, within Shewana3_1291 at 1502.368 kb on + strand, within Shewana3_1291 at 1502.376 kb on - strand, within Shewana3_1291 at 1502.376 kb on - strand, within Shewana3_1291 at 1502.610 kb on - strand, within Shewana3_1291
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.064 mg/ml remove 1,499,899 + Shewana3_1288 0.81 +0.6 1,499,907 - Shewana3_1288 0.81 +1.2 1,500,028 - +0.5 1,500,092 + -0.2 1,500,130 - +1.0 1,500,217 - -0.3 1,500,291 + Shewana3_1289 0.16 +0.6 1,500,313 + Shewana3_1289 0.19 +0.2 1,500,313 + Shewana3_1289 0.19 -1.4 1,500,313 + Shewana3_1289 0.19 +0.1 1,500,347 + Shewana3_1289 0.24 -0.3 1,500,347 - Shewana3_1289 0.24 +0.4 1,500,347 - Shewana3_1289 0.24 +0.6 1,500,401 + Shewana3_1289 0.31 +0.2 1,500,420 + Shewana3_1289 0.34 -0.3 1,500,697 - Shewana3_1289 0.73 -0.3 1,500,717 - Shewana3_1289 0.76 +1.8 1,501,022 + Shewana3_1290 0.14 +0.6 1,501,075 - Shewana3_1290 0.19 +0.4 1,501,075 - Shewana3_1290 0.19 +1.4 1,501,173 + Shewana3_1290 0.29 +0.3 1,501,202 - Shewana3_1290 0.32 +0.1 1,501,240 - Shewana3_1290 0.36 +0.5 1,501,374 - Shewana3_1290 0.50 +0.2 1,501,379 - Shewana3_1290 0.50 +0.7 1,501,556 + Shewana3_1290 0.68 +0.7 1,501,681 + Shewana3_1290 0.80 +1.2 1,501,764 + Shewana3_1290 0.89 -0.0 1,502,307 - Shewana3_1291 0.34 -0.4 1,502,368 + Shewana3_1291 0.38 +0.0 1,502,376 - Shewana3_1291 0.39 +0.6 1,502,376 - Shewana3_1291 0.39 +0.3 1,502,610 - Shewana3_1291 0.57 +0.9
Or see this region's nucleotide sequence