Experiment: Thallium(I) acetate 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1282 and Shewana3_1283 overlap by 4 nucleotides Shewana3_1283 and Shewana3_1284 overlap by 4 nucleotides Shewana3_1284 and Shewana3_1285 are separated by 10 nucleotides Shewana3_1285 and Shewana3_1286 overlap by 4 nucleotides Shewana3_1286 and Shewana3_1287 are separated by 12 nucleotides
Shewana3_1282: Shewana3_1282 - type II secretion system protein E (RefSeq), at 1,493,533 to 1,494,603
_1282
Shewana3_1283: Shewana3_1283 - conjugal transfer protein TrbC (RefSeq), at 1,494,600 to 1,494,986
_1283
Shewana3_1284: Shewana3_1284 - putative conjugal transfer trbD transmembrane protein (RefSeq), at 1,494,983 to 1,495,252
_1284
Shewana3_1285: Shewana3_1285 - conjugal transfer ATPase TrbE (RefSeq), at 1,495,263 to 1,497,713
_1285
Shewana3_1286: Shewana3_1286 - conjugal transfer protein TrbJ (RefSeq), at 1,497,710 to 1,498,453
_1286
Shewana3_1287: Shewana3_1287 - putative lipoprotein (RefSeq), at 1,498,466 to 1,498,783
_1287
Position (kb) 1495
1496
1497
1498 Strain fitness (log2 ratio) -1
0
1 at 1494.423 kb on + strand, within Shewana3_1282 at 1494.481 kb on - strand, within Shewana3_1282 at 1494.558 kb on - strand at 1494.668 kb on + strand, within Shewana3_1283 at 1494.685 kb on + strand, within Shewana3_1283 at 1495.041 kb on + strand, within Shewana3_1284 at 1495.049 kb on - strand, within Shewana3_1284 at 1495.124 kb on + strand, within Shewana3_1284 at 1495.144 kb on + strand, within Shewana3_1284 at 1495.371 kb on - strand at 1495.398 kb on + strand at 1495.398 kb on + strand at 1495.398 kb on + strand at 1495.406 kb on - strand at 1495.406 kb on - strand at 1495.422 kb on + strand at 1495.763 kb on + strand, within Shewana3_1285 at 1495.771 kb on - strand, within Shewana3_1285 at 1495.802 kb on - strand, within Shewana3_1285 at 1495.977 kb on + strand, within Shewana3_1285 at 1496.045 kb on - strand, within Shewana3_1285 at 1496.065 kb on - strand, within Shewana3_1285 at 1496.077 kb on - strand, within Shewana3_1285 at 1496.459 kb on + strand, within Shewana3_1285 at 1496.486 kb on - strand, within Shewana3_1285 at 1496.662 kb on - strand, within Shewana3_1285 at 1496.673 kb on - strand, within Shewana3_1285 at 1496.721 kb on - strand, within Shewana3_1285 at 1496.895 kb on + strand, within Shewana3_1285 at 1496.898 kb on - strand, within Shewana3_1285 at 1496.900 kb on + strand, within Shewana3_1285 at 1496.903 kb on - strand, within Shewana3_1285 at 1496.903 kb on - strand, within Shewana3_1285 at 1497.050 kb on - strand, within Shewana3_1285 at 1497.068 kb on - strand, within Shewana3_1285 at 1497.147 kb on + strand, within Shewana3_1285 at 1497.449 kb on + strand, within Shewana3_1285 at 1497.592 kb on - strand at 1497.724 kb on - strand at 1497.881 kb on + strand, within Shewana3_1286 at 1497.901 kb on - strand, within Shewana3_1286 at 1498.009 kb on + strand, within Shewana3_1286 at 1498.009 kb on + strand, within Shewana3_1286 at 1498.056 kb on - strand, within Shewana3_1286 at 1498.094 kb on + strand, within Shewana3_1286 at 1498.124 kb on + strand, within Shewana3_1286 at 1498.214 kb on + strand, within Shewana3_1286 at 1498.309 kb on + strand, within Shewana3_1286 at 1498.317 kb on - strand, within Shewana3_1286 at 1498.564 kb on + strand, within Shewana3_1287
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.064 mg/ml remove 1,494,423 + Shewana3_1282 0.83 -0.2 1,494,481 - Shewana3_1282 0.89 +0.9 1,494,558 - -0.4 1,494,668 + Shewana3_1283 0.18 +1.1 1,494,685 + Shewana3_1283 0.22 -0.2 1,495,041 + Shewana3_1284 0.21 -0.2 1,495,049 - Shewana3_1284 0.24 +0.8 1,495,124 + Shewana3_1284 0.52 +0.8 1,495,144 + Shewana3_1284 0.60 +1.2 1,495,371 - +0.4 1,495,398 + +0.4 1,495,398 + -0.0 1,495,398 + +0.0 1,495,406 - -0.2 1,495,406 - -1.4 1,495,422 + -0.2 1,495,763 + Shewana3_1285 0.20 +0.4 1,495,771 - Shewana3_1285 0.21 -0.2 1,495,802 - Shewana3_1285 0.22 +0.1 1,495,977 + Shewana3_1285 0.29 -0.0 1,496,045 - Shewana3_1285 0.32 -0.3 1,496,065 - Shewana3_1285 0.33 -1.1 1,496,077 - Shewana3_1285 0.33 -0.3 1,496,459 + Shewana3_1285 0.49 +0.1 1,496,486 - Shewana3_1285 0.50 -0.0 1,496,662 - Shewana3_1285 0.57 +0.2 1,496,673 - Shewana3_1285 0.58 -0.1 1,496,721 - Shewana3_1285 0.59 +0.1 1,496,895 + Shewana3_1285 0.67 +0.3 1,496,898 - Shewana3_1285 0.67 +0.3 1,496,900 + Shewana3_1285 0.67 +1.1 1,496,903 - Shewana3_1285 0.67 +0.1 1,496,903 - Shewana3_1285 0.67 +0.3 1,497,050 - Shewana3_1285 0.73 +0.6 1,497,068 - Shewana3_1285 0.74 -0.2 1,497,147 + Shewana3_1285 0.77 +0.2 1,497,449 + Shewana3_1285 0.89 -0.2 1,497,592 - -0.4 1,497,724 - +0.7 1,497,881 + Shewana3_1286 0.23 -0.0 1,497,901 - Shewana3_1286 0.26 +0.0 1,498,009 + Shewana3_1286 0.40 -0.3 1,498,009 + Shewana3_1286 0.40 +0.1 1,498,056 - Shewana3_1286 0.47 +0.2 1,498,094 + Shewana3_1286 0.52 +0.2 1,498,124 + Shewana3_1286 0.56 -0.4 1,498,214 + Shewana3_1286 0.68 +0.3 1,498,309 + Shewana3_1286 0.81 +0.1 1,498,317 - Shewana3_1286 0.82 +0.7 1,498,564 + Shewana3_1287 0.31 -0.4
Or see this region's nucleotide sequence