Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1171

Experiment: Thallium(I) acetate 0.064 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1169 and Shewana3_1170 overlap by 4 nucleotidesShewana3_1170 and Shewana3_1171 are separated by 1 nucleotidesShewana3_1171 and Shewana3_1172 are separated by 12 nucleotidesShewana3_1172 and Shewana3_1173 are separated by 53 nucleotides Shewana3_1169: Shewana3_1169 - amine oxidase (RefSeq), at 1,379,694 to 1,380,944 _1169 Shewana3_1170: Shewana3_1170 - hypothetical protein (RefSeq), at 1,380,941 to 1,381,735 _1170 Shewana3_1171: Shewana3_1171 - cyclopropane-fatty-acyl-phospholipid synthase (RefSeq), at 1,381,737 to 1,382,993 _1171 Shewana3_1172: Shewana3_1172 - hypothetical protein (RefSeq), at 1,383,006 to 1,383,551 _1172 Shewana3_1173: Shewana3_1173 - hypothetical protein (RefSeq), at 1,383,605 to 1,384,177 _1173 Position (kb) 1381 1382 1383Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1380.738 kb on - strand, within Shewana3_1169at 1380.907 kb on + strandat 1380.915 kb on - strandat 1380.915 kb on - strandat 1380.915 kb on - strandat 1380.933 kb on - strandat 1380.953 kb on - strandat 1380.953 kb on - strandat 1380.960 kb on - strandat 1381.055 kb on - strand, within Shewana3_1170at 1381.116 kb on + strand, within Shewana3_1170at 1381.155 kb on + strand, within Shewana3_1170at 1381.211 kb on - strand, within Shewana3_1170at 1381.211 kb on - strand, within Shewana3_1170at 1381.245 kb on - strand, within Shewana3_1170at 1381.253 kb on + strand, within Shewana3_1170at 1381.369 kb on + strand, within Shewana3_1170at 1381.371 kb on + strand, within Shewana3_1170at 1381.377 kb on - strand, within Shewana3_1170at 1381.573 kb on + strand, within Shewana3_1170at 1381.674 kb on + strandat 1381.808 kb on + strandat 1381.808 kb on + strandat 1381.808 kb on + strandat 1381.816 kb on - strandat 1381.839 kb on + strandat 1381.846 kb on + strandat 1382.130 kb on - strand, within Shewana3_1171at 1382.212 kb on + strand, within Shewana3_1171at 1382.213 kb on - strand, within Shewana3_1171at 1382.304 kb on - strand, within Shewana3_1171at 1382.307 kb on + strand, within Shewana3_1171at 1382.361 kb on + strand, within Shewana3_1171at 1382.446 kb on + strand, within Shewana3_1171at 1382.499 kb on + strand, within Shewana3_1171at 1382.549 kb on - strand, within Shewana3_1171at 1382.844 kb on + strand, within Shewana3_1171at 1383.022 kb on + strandat 1383.087 kb on + strand, within Shewana3_1172at 1383.187 kb on + strand, within Shewana3_1172at 1383.396 kb on + strand, within Shewana3_1172at 1383.532 kb on + strandat 1383.553 kb on + strandat 1383.667 kb on + strand, within Shewana3_1173at 1383.732 kb on + strand, within Shewana3_1173at 1383.777 kb on + strand, within Shewana3_1173at 1383.785 kb on - strand, within Shewana3_1173

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.064 mg/ml
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1,380,738 - Shewana3_1169 0.83 +0.8
1,380,907 + -0.1
1,380,915 - -0.5
1,380,915 - -1.0
1,380,915 - +2.8
1,380,933 - +0.4
1,380,953 - +0.2
1,380,953 - -0.3
1,380,960 - +0.8
1,381,055 - Shewana3_1170 0.14 +0.5
1,381,116 + Shewana3_1170 0.22 +0.1
1,381,155 + Shewana3_1170 0.27 -3.1
1,381,211 - Shewana3_1170 0.34 +0.5
1,381,211 - Shewana3_1170 0.34 +0.6
1,381,245 - Shewana3_1170 0.38 -0.1
1,381,253 + Shewana3_1170 0.39 +0.1
1,381,369 + Shewana3_1170 0.54 -0.6
1,381,371 + Shewana3_1170 0.54 -0.1
1,381,377 - Shewana3_1170 0.55 -0.9
1,381,573 + Shewana3_1170 0.79 +0.4
1,381,674 + +0.2
1,381,808 + +0.0
1,381,808 + +0.2
1,381,808 + +0.1
1,381,816 - +0.8
1,381,839 + -1.2
1,381,846 + -0.4
1,382,130 - Shewana3_1171 0.31 -0.4
1,382,212 + Shewana3_1171 0.38 -1.8
1,382,213 - Shewana3_1171 0.38 +0.2
1,382,304 - Shewana3_1171 0.45 -1.0
1,382,307 + Shewana3_1171 0.45 -0.4
1,382,361 + Shewana3_1171 0.50 -0.3
1,382,446 + Shewana3_1171 0.56 -2.0
1,382,499 + Shewana3_1171 0.61 -0.1
1,382,549 - Shewana3_1171 0.65 -1.2
1,382,844 + Shewana3_1171 0.88 +0.8
1,383,022 + -1.6
1,383,087 + Shewana3_1172 0.15 -0.9
1,383,187 + Shewana3_1172 0.33 -0.3
1,383,396 + Shewana3_1172 0.71 -0.3
1,383,532 + -0.1
1,383,553 + -0.0
1,383,667 + Shewana3_1173 0.11 -0.0
1,383,732 + Shewana3_1173 0.22 +0.9
1,383,777 + Shewana3_1173 0.30 -0.8
1,383,785 - Shewana3_1173 0.31 -3.5

Or see this region's nucleotide sequence