Experiment: Thallium(I) acetate 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1153 and Shewana3_1154 are separated by 379 nucleotides Shewana3_1154 and Shewana3_1155 are separated by 55 nucleotides Shewana3_1155 and Shewana3_1156 are separated by 390 nucleotides
Shewana3_1153: Shewana3_1153 - putative signal transduction histidine kinase (RefSeq), at 1,359,708 to 1,360,868
_1153
Shewana3_1154: Shewana3_1154 - isochorismatase hydrolase (RefSeq), at 1,361,248 to 1,361,793
_1154
Shewana3_1155: Shewana3_1155 - hypothetical protein (RefSeq), at 1,361,849 to 1,362,571
_1155
Shewana3_1156: Shewana3_1156 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 1,362,962 to 1,364,533
_1156
Position (kb)
1361
1362
1363 Strain fitness (log2 ratio)
-2
-1
0
1 at 1360.851 kb on - strand at 1360.999 kb on + strand at 1361.181 kb on + strand at 1361.191 kb on + strand at 1361.307 kb on + strand, within Shewana3_1154 at 1361.315 kb on - strand, within Shewana3_1154 at 1361.429 kb on + strand, within Shewana3_1154 at 1361.700 kb on + strand, within Shewana3_1154 at 1361.708 kb on - strand, within Shewana3_1154 at 1361.735 kb on - strand, within Shewana3_1154 at 1361.889 kb on + strand at 1362.020 kb on - strand, within Shewana3_1155 at 1362.266 kb on - strand, within Shewana3_1155 at 1362.271 kb on + strand, within Shewana3_1155 at 1362.279 kb on - strand, within Shewana3_1155 at 1362.395 kb on + strand, within Shewana3_1155 at 1362.440 kb on + strand, within Shewana3_1155 at 1362.559 kb on - strand at 1362.712 kb on - strand at 1362.744 kb on - strand at 1362.773 kb on + strand at 1362.781 kb on - strand at 1362.931 kb on + strand at 1362.931 kb on + strand at 1362.939 kb on - strand at 1363.015 kb on - strand at 1363.045 kb on + strand at 1363.106 kb on + strand at 1363.229 kb on - strand, within Shewana3_1156 at 1363.313 kb on + strand, within Shewana3_1156 at 1363.523 kb on + strand, within Shewana3_1156 at 1363.523 kb on + strand, within Shewana3_1156
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.064 mg/ml remove 1,360,851 - +0.3 1,360,999 + +0.5 1,361,181 + +0.1 1,361,191 + +0.4 1,361,307 + Shewana3_1154 0.11 +1.4 1,361,315 - Shewana3_1154 0.12 -1.1 1,361,429 + Shewana3_1154 0.33 +1.3 1,361,700 + Shewana3_1154 0.83 +0.0 1,361,708 - Shewana3_1154 0.84 -1.1 1,361,735 - Shewana3_1154 0.89 -1.0 1,361,889 + -0.2 1,362,020 - Shewana3_1155 0.24 +1.2 1,362,266 - Shewana3_1155 0.58 +0.7 1,362,271 + Shewana3_1155 0.58 -1.5 1,362,279 - Shewana3_1155 0.59 +0.7 1,362,395 + Shewana3_1155 0.76 -1.5 1,362,440 + Shewana3_1155 0.82 -0.8 1,362,559 - -0.1 1,362,712 - -1.3 1,362,744 - +1.2 1,362,773 + -1.5 1,362,781 - -2.0 1,362,931 + +0.3 1,362,931 + +0.7 1,362,939 - -0.9 1,363,015 - -0.8 1,363,045 + +0.3 1,363,106 + +0.1 1,363,229 - Shewana3_1156 0.17 -0.9 1,363,313 + Shewana3_1156 0.22 -0.7 1,363,523 + Shewana3_1156 0.36 +0.6 1,363,523 + Shewana3_1156 0.36 -0.3
Or see this region's nucleotide sequence