Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1097

Experiment: Thallium(I) acetate 0.064 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1096 and Shewana3_1097 are separated by 7 nucleotidesShewana3_1097 and Shewana3_1098 are separated by 67 nucleotides Shewana3_1096: Shewana3_1096 - 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase (RefSeq), at 1,290,407 to 1,291,552 _1096 Shewana3_1097: Shewana3_1097 - riboflavin synthase subunit alpha (RefSeq), at 1,291,560 to 1,292,216 _1097 Shewana3_1098: Shewana3_1098 - GTP cyclohydrolase II / 3,4-dihydroxy-2-butanone 4-phosphate synthase (RefSeq), at 1,292,284 to 1,293,387 _1098 Position (kb) 1291 1292 1293Strain fitness (log2 ratio) -2 -1 0 1at 1291.700 kb on + strand, within Shewana3_1097at 1291.784 kb on + strand, within Shewana3_1097at 1291.854 kb on - strand, within Shewana3_1097at 1291.882 kb on + strand, within Shewana3_1097at 1291.887 kb on + strand, within Shewana3_1097at 1291.890 kb on - strand, within Shewana3_1097at 1291.995 kb on - strand, within Shewana3_1097at 1292.042 kb on + strand, within Shewana3_1097at 1292.297 kb on + strandat 1292.300 kb on - strandat 1292.305 kb on - strandat 1292.305 kb on - strandat 1292.438 kb on + strand, within Shewana3_1098at 1292.563 kb on + strand, within Shewana3_1098at 1292.626 kb on + strand, within Shewana3_1098at 1292.682 kb on + strand, within Shewana3_1098at 1292.692 kb on + strand, within Shewana3_1098at 1292.700 kb on - strand, within Shewana3_1098at 1292.700 kb on - strand, within Shewana3_1098at 1292.707 kb on + strand, within Shewana3_1098at 1292.863 kb on - strand, within Shewana3_1098

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.064 mg/ml
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1,291,700 + Shewana3_1097 0.21 +0.4
1,291,784 + Shewana3_1097 0.34 +1.1
1,291,854 - Shewana3_1097 0.45 -0.8
1,291,882 + Shewana3_1097 0.49 +0.7
1,291,887 + Shewana3_1097 0.50 +0.6
1,291,890 - Shewana3_1097 0.50 -1.9
1,291,995 - Shewana3_1097 0.66 -0.2
1,292,042 + Shewana3_1097 0.73 +0.9
1,292,297 + +0.3
1,292,300 - +0.8
1,292,305 - +0.8
1,292,305 - -0.2
1,292,438 + Shewana3_1098 0.14 +0.0
1,292,563 + Shewana3_1098 0.25 +0.1
1,292,626 + Shewana3_1098 0.31 +0.6
1,292,682 + Shewana3_1098 0.36 +0.2
1,292,692 + Shewana3_1098 0.37 -0.0
1,292,700 - Shewana3_1098 0.38 -1.3
1,292,700 - Shewana3_1098 0.38 +1.4
1,292,707 + Shewana3_1098 0.38 +0.3
1,292,863 - Shewana3_1098 0.52 -1.2

Or see this region's nucleotide sequence